The TOC in my generated project is not navigating to the correct subfolders

The TOC in my generated project (Multiscreen HTML5/Andriod (Desktop) layout) is not opening to the correct sub folders.
For example, when selecting a Level 1 folder (say the one highlighted in orange), it will jump to a Level 3 list of topics in a completely different level 1 structure (say the list highlighted in green)
Level 1
       Level 2
              Level 3
              Level 3
              Level 3
       Level 2
              Level 3
              Level 3
              Level 3
Level 1
       Level 2
              Level 3
              Level 3
              Level 3
       Level 2
              Level 3
              Level 3
              Level 3
I have looked at the TOC report, everything is fine there, the TOC in roboHelp looks fine as far as I can see.
I have noooo idea how to fix this!

Check what is happening in webhelp. Same problem there?
See www.grainge.org for RoboHelp and Authoring tips
@petergrainge

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