Troubleshooting iMac Startup Problem

I've been trying to troubleshoot a problem with my mid-2007 iMac 24" where it sometimes will not startup.  I can hear it turn on when I press the power button but it doesn't chime.  I can also hear the fan.  I don't boot from the internal drive as my main drive and instead boot from a larger firewire external drive attached directly to the iMac.  When the iMac won't start up, I usually let it sit for about ten minutes and it will startup again.  Yesterday though, this procedure wasn't working but it did eventually startup after I left it alone for several hours to run some errands.
After using it for about an hour, the internal drive unmounted and disappeared from my desktop -- I got the usual "disk was not properly ejected" warning when it happened.  I ran Disk Utility but the drive did not show up on the list.  I also ran System Profiler and it did not locate the drive either.  Instead it said "There was an error scanning for Serial-ATA Devices".
My question is this, could it be that the internal hard drive has been slowly failing and has been the cause of the startup problem?  Does the internal HD have to be in working order to be able to startup properly and boot up from my external?  I've been told by others that it does appear to be a logic board or video card problem and I've inspected and reseated the RAM and it has not been the issue.
My iMac is out of warranty and I'm gonna have to bring it in for repair.  If it is the internal drive that is the problem, I don't want to shut it down for any reason until I'm ready to have it repaired.  Thankfully, I have full backups.

This sounds very similar to my situation. When I restart the computer it usually gives me the grey screen with ?-folder.  Using the Install Disc to boot, I ran Disk Utility but the drive did not show up on the list.  I also ran System Profiler and it did not locate the drive either.  Instead it said "There was an error scanning for Serial-ATA Devices".  Wait a while or repeated restarts eventually boots the system.  When I can get the iMac to boot up I used the Install disc and ran Disc Utility Repair but no errors were detected.  I have ran the extended AHT a couple of times and no errors were returned. 
Did you resolve your problem?  Bad HD?

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