Viewing chemical structure stored as a SMILES string

Hello,
I am testing a trial version of Crystal Reports to create reports from our Oracle database which we use to store chemical information. I have had success except for being able to view chemical structures that are stored in the database in SMILES format. I want to see the actual structure in the report. Right now, it just shows a blank box. Does Crystal Reports have a way of doing this?
Thank you.

Hi Paige,
I've never seen or heard of anyone every asking about that field type so I did a little searching and found this link:
http://www.dalkescientific.com/writings/NBN/chemical_dbs.html
I doubt we support that field type but try creating a Command Object, connect to the DB and then select Add Command and type in SQL that should return that field and then drop the field into the report and see if it shows any thing.
If not the only thing I can think of is if it's possible to create a stored Procedure and convert the data into text formats as a work around.
If you could explain what you shoudl see as an example and how to insert the data into and oracle field I can post this to the PM and R&D group to see if it's something we could add into our data type support.
Thank you
Don

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How to create Protein or Chemical structures in .pdb or .mol format for use with iBooks Author. Please help.

Dear Community,
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I believe that Apple should have provided an easily way to get Pymol images into iBooks Author as VRML has been the de facto standard. After a number of days, I have a method which works, but this much effort should not be necessary. Anyway here it is.
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viewport 512,384
Note, I'm not totally sure you need to do this.
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Hi,
So I have a View designed in one file that validates someone who is authorized.
Then I have a stored procedure to display authorized stationeries created before a given date. Its takes a parameter @CreatedOn.
How can I use VIEW in my stored procedure so I can display all the authorized which are set 1 before a given date?
My VIEW:
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Try something like below, You need to replace CreatedDate column with appropriate date column in your table.
1. Alter the view to get the required date:
ALTER VIEW vw_AuthorizedStationeries AS
SELECT Authorized, CreatedDate
FROM dbo.Stationeries
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2. Alter SP:
CREATE PROCEDURE usp_stationeries (@CreatedOn datetime)
AS
BEGIN
SELECT Authorized
FROM vw_AuthorizedStationeries
WHERE CreatedDate <= @CreatedOn
END
GO
OR
You can pull required information directly from your table:
CREATE PROCEDURE usp_stationeries (@CreatedOn datetime)
AS
BEGIN
SELECT Authorized
FROM dbo.Stationeries
WHERE CreatedDate <= @CreatedOn and Authorized = 1
END
GO
If this post answers your query, please click "Mark As Answer" or "Vote as Helpful".

HT4910 How to view my photos stored in icloud and manage those

HI,
How to view my photos stored in icloud and manage those

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Tcode to view/change Structures

Hi,
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Thanks!

VBMTV is a structure and not a table. In SE11 select radio button Data type and enter VBMTV in corresponding fields and click on display to view the contents of the structure.
Regards,
GSL.

Why view have no stored data ? And what is the reason view take more time

Why view have no stored data ? And what is the reason view take more time to query ?
what happen if a view have stored data?

user12941450 wrote:
I want to know the reason that why querying view is slower then querying a normal table?..Untrue.
For example take a table with 2laks record and a view for that table.
If i make a query like( Select name,address from table) then it works fast then select(name,address)from view..Incorrectly interpreting the results.
A view is a SQL statement. Only difference is that the SQL statement is stored in the database's dictionary. Let's consider the following view:
create or replace view foo_view as select * from empWhen you use the view as follows:
select * from foo_viewOracle sees it as follows:
select * from (select * from emp)This is no slower, or no faster, than providing the following SQL to Oracle:
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View table structure

Hi,
Is there in other way or command to view table structure.Like to view tables,constraints on same etc..
Thanks,

why not
desc emp
I agree the OP hasn't spent as much time formulating their question as they expect us to spend on answering it, but it seems clear to me that they want a single command which lists everything - not just columns but constraints and indexes too.
To which the short answer is, 'cannot be done'.
The slightly longer answer expands to include references to IDEs such as SQL Developer or TOAD which offer us tabbed information sheets on our database objects, and so provide an easier way of seeing this information than running half-a-dozen queries against the data dictionary.
Cheers, APC
blog: http://radiofreetooting.blogspot,com

Application for writing chemical structure formulas?

Hello there mac-people.
I don't know if this is the right forum to ask for this but I was wondering if any of you knew of a good application that allows you to easily create good looking chemical structure formulas? Like this:
http://upload.wikimedia.org/wikipedia/commons/a/a3/Sodium_citrate.png
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Any ideas anyone? Thanks.

Tom Gewecke wrote:
See if any of these work:
http://www.geocities.com/athens/thebes/5118/viewdraw.htm
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Message was edited by: Petter Vitestam

OS10.6 chemical structure add-ins for Excel2004

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View pdf file stored in oracle database through oracle forms

Forms [32 Bit] Version 10.1.2.0.2 (Production)
Oracle9i Enterprise Edition Release 9.2.0.8.0 - 64bit Production
With the Partitioning, OLAP and Oracle Data Mining options
JServer Release 9.2.0.8.0 - Production
Oracle Toolkit Version 10.1.2.0.2 (Production)
PL/SQL Version 10.1.0.4.2 (Production)
Oracle Procedure Builder V10.1.2.0.2 - Production
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Oracle Tools Common Area Version 10.1.2.0.2
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I have created external directory and am able to load pdf files in oracle database table called test_blob.
CREATE TABLE test_blob (
id NUMBER(15)
, file_name VARCHAR2(1000)
, image BLOB
, timestamp DATE
I have 2 pdf files in the table. I want to view this pdf from forms when the user clicks on the button. On when-button-pressed trigger I want to show pdf on the screen. Any help is appreciated. Not on the designer. I want to run form application.
SELECT id, file_name,
DBMS_LOB.GETLENGTH(image) Length,
timestamp
FROM test_blob
ID|FILE_NAME|LENGTH|TIMESTAMP
1001|2011 HeartlandEmployeeReferralCard.pdf|353718|1/28/2013 11:44:41 AM
1002|2011 HeartlandEmployeeReferralCard.pdf|353718|1/28/2013 11:51:07 AM
Edited by: user_anumoses on Jan 28, 2013 11:45 AM

We were able to do the same thing with Oracle Application Server and Oracle WebLogic Server. I cannot remember how different the processes were, but it seems like they were very similar. I am going to give you the instructions on how we implemented a "Read PDF" procedure on the WebLogic Server. If you are still on the Application Server you may have to do some Google searches, but it all boils down to the mod_plsql DAD Configuration file.
Our PDF was located in a table with the following structure:
CASE_DOCUMENTS
   (id_document                    NUMBER NOT NULL,
    doc_blob                       BLOB,
    note                           VARCHAR2(240),
    created_by                     VARCHAR2(20) NOT NULL,
    created_dt                     DATE NOT NULL,
    case_id                        NUMBER NOT NULL,
    filename                       VARCHAR2(100) NOT NULL)Based on that table structure we created a procedure named READ_PDF which you will reference below in the dads.conf file below:
CREATE or REPLACE procedure read_pdf (p_id_document IN number)
is
view_file     blob;
BEGIN
select doc_blob
    into view_file
    from case_documents
   where id_document = p_id_document;
OWA_UTIL.MIME_HEADER ('APPLICATION/PDF', FALSE);
HTP.P ('CONTENT-LENGTH: ' || DBMS_LOB.GETLENGTH (view_file));
OWA_UTIL.http_header_close;
WPG_DOCLOAD.download_file (view_file);
END;
GRANT EXECUTE ON read_pdf TO financial_user_role -- Name of role to execute
/Basically, you are passing in one parameter and that is the primary key for your table. You are selecting the pdf stored in a BLOB for that primary key. The commands below that allow the pdf to open up so you can view it – we got this off some search we did a few years ago.
Now, you need to add logic to your Oracle Form that will call the procedure above, but the URL is based on the dads.conf file that we will set up below… Anyway, we created a button on the form module with a label of "View". In the WHEN-BUTTON-PRESSED trigger the logic looks like this:
-- The View logic uses the DAD (Database Access Descriptors) method to view a .pdf file from the form.
-- The DAD was created on WebLogic Server with the name findadgen. This allows an http request be made
-- to the database.
declare
v_file          varchar2(400);
v_success       boolean;
ret_val         number;
v_http_link     varchar2(400);
begin
-- The format of the link is as follows: hostname:port/pls/DAD_name/procedure_name
v_http_link := 'http://finas03:8888/pls/findadgen/read_pdf?p_id_document=' || :case_documents.id_document;
web.show_document(v_http_link, '_BLANK');
end;The name of our WebLogic Server is "finas03" so that is what is listed in the URL. The "findadgen" is the name of the <Location> in the dads.conf file below, the "read_pdf" is the name of the procedure we created above, the "p_id_document=" is the IN parameter listed in the READ_PDF procedure created above, and the ":case_documents.id_document" is the reference to the primary key in our Oracle Form.
For WebLogic, you can either go through Enterprise Manager (directions below) or update the dads.conf file on the filesystem directly (if you update the dads.conf file directly then skip to step 4 and ignore step 5):
1.     Enterprise Manager -> Web Tier -> ohs1
2.     Oracle HTTP Server (pull-down) – Administration – Advance Configuration
3.     Select File – dads.conf
4.     Add something similar:
# ============================================================================
#                     mod_plsql DAD Configuration File
# ============================================================================
# 1. Please refer to dads.README for a description of this file
# ============================================================================
# Note: This file should typically be included in your plsql.conf file with
# the "include" directive.
# Hint: You can look at some sample DADs in the dads.README file
# ============================================================================
<Location /pls/findadgen>
    SetHandler pls_handler
    Order allow,deny
    Allow from All
    AllowOverride None
    PlsqlDatabaseUsername financial
    PlsqlDatabasePassword sdo_3#d1
    PlsqlDatabaseConnectString ffindbTNSFormat
    PlsqlNLSLanguage AMERICAN_AMERICA.WE8ISO8859P1
    PlsqlAuthenticationMode Basic
    PlsqlDefaultPage read_pdf
</Location>You are adding the <Location> section to your dads.conf file. The "finddadgen" is the name that you will reference in a change you fill make to your Oracle Form. The "financial" is the Schema, the "sdo_3#d1" is the password for that Schema, the "ffindb" is the database that the stored procedure is located on, and the "read_pdf" is a stored procedure you will have to create in order to read the pdf.
5.     Press the "Apply" Button
6.     Obfuscate the DAD password by running the dadTool.pl script located in $ORACLE_HOME/bin (This was done on Unix on our server with the following commands):
$> LD_LIBRARY_PATH=$ORACLE_HOME/lib;export LD_LIBRARY_PATH
$> cd $ORACLE_HOME/bin
$> perl dadTool.pl -f /u01/app/oracle/middleware/asinst_1/config/OHS/ohs1/mod_plsql/dads.conf
7.     Restart the Oracle HTTP Server using Fusion Middleware Control:
Enterprise Manager -> Web Tier -> ohs1
Oracle HTTP Server – Control – Shutdown
Oracle HTTP Server – Control – Start Up
If you followed the instructions above, you should have created a stored procedure, added logic to your Oracle form to reference that stored procedure, and created an entry in the dads.conf file. Once you move the form onto the server and you restart the HTTP Service, you should be able to view a pdf that is stored in a table directly from your Oracle Form.

How to find out the structure stored field value in a standard program

Hi Gurus,
Please suggest me how to find out the structure field stores the value in which table.
Exanple : i have a strutured field in T.code cj31 is BPDY-WERT1 and it is stotring value 10,000,000.00. know i need to find out in which table this value is storing .
Please suggest me its urgent.
Thanks in Adavance!!!
Points will be rewarded.......
Regards,
Kranthi

hi,
Go to transaction ST05,Click activate trace with filter,Give the transactio name as cj31,Go to the transaction and navigate to the place where the particular field is present, then again go to st05 ,Deactivate the trace and display the trace.
Now u can see how the data is fetched ,U can even go to display mode of the same transaction cj33
Thanks
San

Export to Excel is not working for List View Web Part after filtering using Query String parameters in SharePoint 2010

Hi,
I am filtering SharePoint list view web part based on Query string parameter and I am doing Export to Excel by using following code.
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Thanks in Advance.

Hi,
According to your post, my understanding is that you wanted to create hyperlink to export to excel.
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After getting the GUID, you need to “decode” the list GUID.
Replace %7B with {
Replace %2D with –
Replace %7D with }
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Linda Li
Linda Li
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(As Good As String Array Type..)
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I Want An Example,, Because I'm A Beginner...
(I Wonder...)
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// Try the following, I appologize that I have not compiled and run this ... but it is headed in the right direction
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catch(Exception ex)
ex.printStackTrace();
java.util.Properties props = new java.util.Properties();
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props.put("password", "********"); // you need to replace stars with userid db password
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Viewing chemical structure stored as a SMILES string

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