Why is my Mac so slow?

My Mac is constantly lagging and freezing. It started when I had Mountain Lion and has gotten progressively worse; if anything, upgrading the operating system helped but not enough to make a significant difference. It seems like it's prompted by almost anything I do i.e. opening/closing applications, navigating, and even typing (as I type this I keep randomly getting the spinning wheel). It's the slowest when I have a web browser open and while streaming videos the screen will freeze but the sound will continue playing. The Activity Monitor shows that com.apple.geod is always "(Not Responding)" and - not sure if this matters - when things freeze it usually shows "(Not Responding)" and I'll see either kernel_task, coreaudiod, WindowServer, QuickLookSatellite, mdworker, the current web page I'm on or even Activity Monitor itself using most of the CPU. Otherwise the Activity Monitor shows at least 90% or above idle CPU.
Here is what I've tried so far:
Regular rebooting as well as an SMC and PRAM reset
Disk and disk permissions repair
Checked Spotlight - it's ready to search/not indexing
Uninstalled and reinstalled Flash and Java
Removed 3rd party extensions and any programs I no longer use
Does anyone have any ideas of what could be wrong? Here is my system information:
EtreCheck version: 2.0.11 (98)
Report generated November 9, 2014 at 9:16:05 PM EST
Hardware Information: ℹ️
  MacBook Pro (13-inch, Mid 2012) (Verified)
  MacBook Pro - model: MacBookPro9,2
  1 2.5 GHz Intel Core i5 CPU: 2-core
  4 GB RAM Upgradeable
  BANK 0/DIMM0
  2 GB DDR3 1600 MHz ok
  BANK 1/DIMM0
  2 GB DDR3 1600 MHz ok
  Bluetooth: Good - Handoff/Airdrop2 supported
  Wireless:  en1: 802.11 a/b/g/n
Video Information: ℹ️
  Intel HD Graphics 4000 -
  Color LCD 1280 x 800
System Software: ℹ️
  OS X 10.10 (14A389) - Uptime: 2:28:9
Disk Information: ℹ️
  APPLE HDD TOSHIBA MK5065GSXF disk0 : (500.11 GB)
  S.M.A.R.T. Status: Verified
  EFI (disk0s1) <not mounted> : 210 MB
  Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
  Macintosh HD (disk1) /  [Startup]: 498.88 GB (357.16 GB free)
  Core Storage: disk0s2 499.25 GB Online
  HL-DT-ST DVDRW  GS31N 
USB Information: ℹ️
  Apple Inc. FaceTime HD Camera (Built-in)
  Apple Computer, Inc. IR Receiver
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
  Apple Inc. Apple Internal Keyboard / Trackpad
Thunderbolt Information: ℹ️
  Apple Inc. thunderbolt_bus
Gatekeeper: ℹ️
  Mac App Store and identified developers
Kernel Extensions: ℹ️
  /Library/Extensions
  [loaded] com.globaldelight.driver.BoomDevice (1.3 - SDK 10.9) Support
Launch Agents: ℹ️
  [loaded] com.divx.dms.agent.plist Support
  [loaded] com.divx.update.agent.plist Support
  [loaded] com.google.keystone.agent.plist Support
  [loaded] com.oracle.java.Java-Updater.plist Support
  [loaded] org.macosforge.xquartz.startx.plist Support
Launch Daemons: ℹ️
  [loaded] com.adobe.fpsaud.plist Support
  [loaded] com.google.keystone.daemon.plist Support
  [loaded] com.microsoft.office.licensing.helper.plist Support
  [loaded] com.oracle.java.Helper-Tool.plist Support
  [loaded] com.oracle.java.JavaUpdateHelper.plist Support
  [loaded] org.macosforge.xquartz.privileged_startx.plist Support
User Launch Agents: ℹ️
  [loaded] com.spotify.webhelper.plist Support
User Login Items: ℹ️
  Boom Application (/Applications/Boom.app)
Internet Plug-ins: ℹ️
  FlashPlayer-10.6: Version: 15.0.0.189 - SDK 10.6 Support
  Flash Player: Version: 15.0.0.189 - SDK 10.6 Support
  QuickTime Plugin: Version: 7.7.3
  JavaAppletPlugin: Version: Java 8 Update 25 Check version
  Default Browser: Version: 600 - SDK 10.10
User Internet Plug-ins: ℹ️
  Inquisit_Plugin_4020: Version: 4.0.2.0 (1962) Support
  npBcsMcTcIO: Version: (null) Support
  Picasa: Version: 1.0 - SDK 10.4 Support
  NPRoblox: Version: 1.0.2.12 - SDK 10.9 Support
  Stamps.com: Version: 1.1.12 Support
Safari Extensions: ℹ️
  AdBlock
  Pinterest
  WOT-1
3rd Party Preference Panes: ℹ️
  Flash Player  Support
  Java  Support
Time Machine: ℹ️
  Time Machine not configured!
Top Processes by CPU: ℹ️
      8% WindowServer
      5% Safari
      4% coreaudiod
      1% hidd
      1% com.apple.Safari.SearchHelper
Top Processes by Memory: ℹ️
  382 MB Safari
  198 MB mds_stores
  150 MB softwareupdated
  107 MB Finder
  94 MB com.apple.WebKit.WebContent
Virtual Memory Information: ℹ️
  348 MB Free RAM
  1.78 GB Active RAM
  1.42 GB Inactive RAM
  745 MB Wired RAM
  3.38 GB Page-ins
  2 MB Page-outs

Here's mine after erasing my entire hard drive and reinstalling yosemite
Problem description:
Macbook Pro Running Slow
EtreCheck version: 2.0.11 (98)
Report generated November 10, 2014 at 1:24:42 AM MST
Hardware Information: ℹ️
  MacBook Pro (15-inch, Early 2011) (Verified)
  MacBook Pro - model: MacBookPro8,2
  1 2 GHz Intel Core i7 CPU: 4-core
  4 GB RAM Upgradeable
  BANK 0/DIMM0
  2 GB DDR3 1333 MHz ok
  BANK 1/DIMM0
  2 GB DDR3 1333 MHz ok
  Bluetooth: Old - Handoff/Airdrop2 not supported
  Wireless:  en1: 802.11 a/b/g/n
Video Information: ℹ️
  Intel HD Graphics 3000 - VRAM: 384 MB
  Color LCD 1440 x 900
  AMD Radeon HD 6490M - VRAM: 256 MB
System Software: ℹ️
  OS X 10.10 (14A389) - Uptime: 15 days 6:25:23
Disk Information: ℹ️
  TOSHIBA MK5065GSXF disk0 : (500.11 GB)
  S.M.A.R.T. Status: Verified
  EFI (disk0s1) <not mounted> : 210 MB
  Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
  Macintosh HD (disk1) /  [Startup]: 498.88 GB (445.82 GB free)
  Encrypted AES-XTS UnlockedFailed
  Core Storage: disk0s2 499.25 GB Online
  MATSHITADVD-R   UJ-898 disk2 : (505.6 MB)
  S.M.A.R.T. Status: Verified
  disk2s1 (disk2s1) <not mounted> : 23 MB
  disk2s2 (disk2s2) <not mounted> : 34 MB
  disk2s3 (disk2s3) <not mounted> : 30 MB
  disk2s4 (disk2s4) <not mounted> : 35 MB
  disk2s5 (disk2s5) <not mounted> : 30 MB
  disk2s6 (disk2s6) <not mounted> : 21 MB
  disk2s7 (disk2s7) <not mounted> : 27 MB
  disk2s8 (disk2s8) <not mounted> : 29 MB
  disk2s9 (disk2s9) <not mounted> : 36 MB
  disk2s10 (disk2s10) <not mounted> : 32 MB
  disk2s11 (disk2s11) <not mounted> : 31 MB
  disk2s12 (disk2s12) <not mounted> : 49 MB
  disk2s13 (disk2s13) <not mounted> : 36 MB
  disk2s14 (disk2s14) <not mounted> : 31 MB
  disk2s15 (disk2s15) <not mounted> : 29 MB
  disk2s16 (disk2s16) <not mounted> : 34 MB
USB Information: ℹ️
  Apple Inc. FaceTime HD Camera (Built-in)
  Apple Inc. Apple Internal Keyboard / Trackpad
  Apple Inc. BRCM2070 Hub
  Apple Inc. Bluetooth USB Host Controller
  Apple Computer, Inc. IR Receiver
Thunderbolt Information: ℹ️
  Apple Inc. thunderbolt_bus
Gatekeeper: ℹ️
  Mac App Store and identified developers
Problem System Launch Agents: ℹ️
  [failed] com.apple.CallHistoryPluginHelper.plist
  [failed] com.apple.CallHistorySyncHelper.plist
  [failed] com.apple.cmfsyncagent.plist
  [failed] com.apple.coreservices.appleid.authentication.plist
  [failed] com.apple.EscrowSecurityAlert.plist
  [failed] com.apple.printtool.agent.plist
  [failed] com.apple.printuitool.agent.plist
  [failed] com.apple.SafariNotificationAgent.plist
  [failed] com.apple.sbd.plist
  [failed] com.apple.scopedbookmarkagent.xpc.plist
  [failed] com.apple.spindump_agent.plist
Problem System Launch Daemons: ℹ️
  [failed] com.apple.AssetCacheLocatorService.plist
  [failed] com.apple.awdd.plist
  [failed] com.apple.corestorage.corestoragehelperd.plist
  [failed] com.apple.ctkd.plist
  [failed] com.apple.icloud.findmydeviced.plist
  [failed] com.apple.ifdreader.plist
  [failed] com.apple.nehelper.plist
  [failed] com.apple.nsurlsessiond.plist
  [failed] com.apple.periodic-daily.plist
  [failed] com.apple.periodic-monthly.plist
  [failed] com.apple.periodic-weekly.plist
  [failed] com.apple.softwareupdate_download_service.plist
  [failed] com.apple.spindump.plist
  [failed] com.apple.wdhelper.plist
  [failed] com.apple.xpc.smd.plist
Launch Daemons: ℹ️
  [loaded] com.adobe.fpsaud.plist Support
User Login Items: ℹ️
  iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
Internet Plug-ins: ℹ️
  FlashPlayer-10.6: Version: 15.0.0.189 - SDK 10.6 Support
  Flash Player: Version: 15.0.0.189 - SDK 10.6 Support
  iPhotoPhotocast: Version: 7.0 - SDK 10.8
  QuickTime Plugin: Version: 7.7.3
  Default Browser: Version: 600 - SDK 10.10
3rd Party Preference Panes: ℹ️
  Flash Player  Support
Time Machine: ℹ️
  Time Machine not configured!
Top Processes by CPU: ℹ️
      44% iTunes
      13% WindowServer
      2% hidd
      1% SubmitDiagInfo
      0% fontd
Top Processes by Memory: ℹ️
  150 MB iTunes
  133 MB Mail
  99 MB Safari
  73 MB coreservicesd
  70 MB WindowServer
Virtual Memory Information: ℹ️
  347 MB Free RAM
  1.25 GB Active RAM
  910 MB Inactive RAM
  1.12 GB Wired RAM
  25.80 GB Page-ins
  1.73 GB Page-outs
What should I do now?

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              4 GB RAM
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              [loaded] com.sophos.uiserver.plist
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