Pdf problem in mobile ios.

I am having trouble with pdfs in mobile ios. Our pdfs are generated by a webapp and are basically a byte stream. Our app puts the byte stream as source of an iframe. When we run our app via Safari on the iPad, it opens the pdf the but cuts it off after about 1 and 1/4 pages of approx 6 page pdf. This works fine on Safari on mac laptop.
It appears like it does not recognize that it is a pdf file even though we set meta data in the web program that produces the byte stream   

I also made an actual pdf as source to the iframe and it did the same thing ie. cutoff the pdf render at a fixed point; about 1 1/4 pages into the 6 page pdf. I do not see the box at top to open in iBooks or other pdf reader app.
It seems that it opens window at some fixed size and cuts the pdf or perhaps it is not recognizing that the file or stream is pdf

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