10.5.5 break anti-virus mail server stops working

We updated to 10.5.5 and suddenly our server stopped forwarding mail.
I noticed in the logs that the anti-spam and anti-virus (clamav etc.) were failing to update and run. The server was brutally slow. I turned off the anti-virus checks and everything is working again after two days of searching.
Any idea what broke and how a newbie could fix it?
Thanks,
Ryan

Good morning,
Thank you very much for offering to help.
Here is the amavis.log:
5625-13) smtp resp to greeting: 220 roy.nanuc.ualberta.ca ESMTP Postfix
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp cmd> EHLO localhost
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to EHLO: 250 roy.nanuc.ualberta.ca\nPIPELINING\nSIZE 10485760\nVRFY\nAUTH GSSAPI\nETRN\nENHANCEDSTATUSCODES\n8BITMIME\nDSN
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) AUTH not needed, user='', MTA offers 'GSSAPI'
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp cmd> MAIL FROM:<[email protected]> BODY=7BIT
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp cmd> RCPT TO:<[email protected]> ORCPT=rfc822;[email protected] NOTIFY=NEVER
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp cmd> DATA
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to MAIL (pip): 250 2.1.0 Ok
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to RCPT (pip) (<[email protected]>): 250 2.1.5 Ok, id=25625-13, from MTA([127.0.0.1]:10025): 250 2.1.5 Ok
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to DATA: 354 End data with <CR><LF>.<CR><LF>
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp cmd> QUIT
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to data-dot (<[email protected]>): 250 2.0.0 Ok: queued as 4F2A79DDF40
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) smtp resp to QUIT: 221 2.0.0 Bye
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) FWD via SMTP: <[email protected]> -> <[email protected]>,BODY=7BIT 250 2.6.0 Ok, id=25625-13, from MTA([127.0.0.1]:10025): 250 2.0.0 Ok: queued as 4F2A79DDF40
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) Passed CLEAN, [142.231.77.1] [142.103.48.148] <[email protected]> -> <[email protected]>, Message-ID: <[email protected]>, mail_id: lTLSt8bShtqL, Hits: -2.399, size: 1420, queued_as: 4F2A79DDF40, 5644 ms
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) TIMING [total 5663 ms] - SMTP greeting: 3 (0%)0, SMTP EHLO: 1 (0%)0, SMTP pre-MAIL: 1 (0%)0, SMTP pre-DATA-flush: 3 (0%)0, SMTP DATA: 1 (0%)0, check_init: 1 (0%)0, digest_hdr: 0 (0%)0, digest_body: 0 (0%)0, genmailid: 1 (0%)0, mime_decode: 10 (0%)0, get-file-type1: 30 (1%)1, decompose_part: 4 (0%)1, parts_decode: 0 (0%)1, check_header: 3 (0%)1, spam-wb-list: 10 (0%)1, SA msg read: 2 (0%)1, SA parse: 3 (0%)1, SA check: 5464 (96%)98, update_cache: 8 (0%)98, decidemaildestiny: 1 (0%)98, fwd-connect: 44 (1%)99, fwd-mail-pip: 37 (1%)99, fwd-rcpt-pip: 0 (0%)99, fwd-data-chkpnt: 0 (0%)99, write-header: 1 (0%)99, fwd-data-contents: 0 (0%)99, fwd-end-chkpnt: 10 (0%)100, prepare-dsn: 1 (0%)100, mainlogentry: 7 (0%)100, update_snmp: 2 (0%)100, SMTP pre-response: 1 (0%)100, SMTP response: 0 (0%)100, unlink-1-files: 14 (0%)100, rundown: 1 (0%)100
Sep 23 10:44:57 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) load: 5 %, total idle 1269.245 s, busy 61.959 s
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-09) process_request: fileno sock=14, STDIN=14, STDOUT=14
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) ESMTP::10024 /var/amavis/tmp/amavis-20080923T102933-25702: <[email protected]> -> <[email protected]> SIZE=2658 Received: from roy.nanuc.ualberta.ca ([127.0.0.1]) by localhost (brodeur.nanuc.ualberta.ca [127.0.0.1]) (amavisd-new, port 10024) with ESMTP for <[email protected]>; Tue, 23 Sep 2008 10:47:21 -0600 (MDT)
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) body hash: 317adbdde036e2d63027358ccd2878f4
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) Checking: LZdT8Jzafapz [88.87.242.247] <[email protected]> -> <[email protected]>
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) 2822.From: <[email protected]>
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) p003 1 Content-Type: multipart/alternative
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) p001 1/1 Content-Type: text/plain, size: 536 B, name:
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) p002 1/2 Content-Type: text/html, size: 951 B, name:
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) Checking for banned types and filenames
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) collect banned table[0]: [email protected], tables: DEFAULT=>Amavis::Lookup::RE=ARRAY(0xae3b80)
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) p.path [email protected]: "P=p003,L=1,M=multipart/alternative | P=p001,L=1/1,M=text/plain,T=asc"
Sep 23 10:47:21 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) p.path [email protected]: "P=p003,L=1,M=multipart/alternative | P=p002,L=1/2,M=text/html,T=html"
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) spam_scan: score=16.479 autolearn=spam tests=[BAYES99=3.5,DOS_OE_TO_MX=2.75,FH_HELO_EQ_D_D_D_D=0.001,HTML_MESSAGE=0.001,RCVD_IN_BL_ SPAMCOP_NET=1.96,RCVD_IN_SORBS_DUL=0.877,RDNS_DYNAMIC=0.1,URIBL_AB_SURBL=1.86,UR IBL_BLACK=1.955,URIBL_JP_SURBL=1.501,URIBL_OB_SURBL=1.5,URIBL_SCSURBL=0.474]
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) blocking contents category is (6) for [email protected]
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) donotify_andquar: ccat=Spam (6,0) ("6":Spam, "5":Spammy, "1,1":CleanTag, "1":Clean, "0":CatchAll) ccat_block=(6), q_mth=local:spam-%m.gz, qar_mth=
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) local delivery: -> <spam-quarantine>, mbx=/var/virusmails/spam-LZdT8Jzafapz.gz
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) SPAM, <[email protected]> -> <[email protected]>, Yes, score=16.479 tag=2 tag2=6 kill=6 tests=[BAYES_99=3.5, DOSOE_TOMX=2.75, FHHELO_EQ_D_D_DD=0.001, HTML_MESSAGE=0.001, RCVDIN_BL_SPAMCOPNET=1.96, RCVDIN_SORBSDUL=0.877, RDNS_DYNAMIC=0.1, URIBLABSURBL=1.86, URIBL_BLACK=1.955, URIBLJPSURBL=1.501, URIBLOBSURBL=1.5, URIBLSCSURBL=0.474], autolearn=spam, quarantine LZdT8Jzafapz (spam-quarantine)
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) DSN: FILTER 554 Spam, spam level 16.479 exceeds cutoff level 10, <[email protected]> -> <[email protected]>
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) Blocked SPAM, [88.87.242.247] [88.87.242.247] <[email protected]> -> <[email protected]>, quarantine: spam-LZdT8Jzafapz.gz, Message-ID: <000501c91d9c$05859a88$8f5aeeab@bdrxi>, mail_id: LZdT8Jzafapz, Hits: 16.479, size: 2658, 5391 ms
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) TIMING [total 5516 ms] - SMTP greeting: 2 (0%)0, SMTP EHLO: 1 (0%)0, SMTP pre-MAIL: 1 (0%)0, SMTP pre-DATA-flush: 36 (1%)1, SMTP DATA: 2 (0%)1, check_init: 1 (0%)1, digest_hdr: 0 (0%)1, digest_body: 0 (0%)1, genmailid: 1 (0%)1, mime_decode: 27 (0%)1, get-file-type2: 199 (4%)5, decompose_part: 2 (0%)5, parts_decode: 0 (0%)5, check_header: 2 (0%)5, spam-wb-list: 7 (0%)5, SA msg read: 2 (0%)5, SA parse: 5 (0%)5, SA check: 5012 (91%)96, update_cache: 54 (1%)97, decidemaildestiny: 2 (0%)97, write-header: 24 (0%)98, save-to-local-mailbox: 1 (0%)98, prepare-dsn: 2 (0%)98, mainlogentry: 8 (0%)98, update_snmp: 2 (0%)98, SMTP pre-response: 1 (0%)98, SMTP response: 0 (0%)98, unlink-2-files: 120 (2%)100, rundown: 2 (0%)100
Sep 23 10:47:26 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25702]: (25702-10) load: 5 %, total idle 1017.355 s, busy 56.145 s
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-13) process_request: fileno sock=14, STDIN=14, STDOUT=14
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) ESMTP::10024 /var/amavis/tmp/amavis-20080923T102246-25625: <[email protected]> -> <[email protected]> SIZE=101053 Received: from roy.nanuc.ualberta.ca ([127.0.0.1]) by localhost (brodeur.nanuc.ualberta.ca [127.0.0.1]) (amavisd-new, port 10024) with ESMTP for <[email protected]>; Tue, 23 Sep 2008 10:51:15 -0600 (MDT)
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) body hash: c3cd040b5047389196bd53fb2d5a8109
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) Checking: FK2K9OKp4N1Z [129.128.5.19] <[email protected]> -> <[email protected]>
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) 2822.From: <[email protected]>
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) p003 1 Content-Type: multipart/alternative
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) p001 1/1 Content-Type: text/plain, size: 11777 B, name:
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) p002 1/2 Content-Type: text/html, size: 80574 B, name:
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) Checking for banned types and filenames
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) collect banned table[0]: [email protected], tables: DEFAULT=>Amavis::Lookup::RE=ARRAY(0xae3b80)
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) p.path [email protected]: "P=p003,L=1,M=multipart/alternative | P=p001,L=1/1,M=text/plain,T=txt"
Sep 23 10:51:15 brodeur.nanuc.ualberta.ca /usr/bin/amavisd[25625]: (25625-14) p.path [email protected]: "P=p003,L=1,M=multipart/alternative | P=p002,L=1/2,M=text/html,T=html"
I've had to turn off virus scanning to get any forwarding done.
The spam filter is working but the server grinds to a halt every few minutes, then catches up. Like it's trying something, gives up, and then goes back to work for a bit until it tries again.
The server is running web services and mail forwarding to the University only.
Our firewall restricts outgoing (internet) from the server only accepting incoming requests. That way if it gets hacked it can't attack anyone. We're able to run mac updates via the University software update server (local outgoing is allowed).
Thank you again for any help you can offer.

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    Information learned from Linc Davis.
    If you prefer to make your user library permanently visible, use the Terminal command found below.
    Show User Library Directory in Mac OS X 10.7 Lion & 10.8 Mountain Lion
    You might want to bookmark the command. I had to use it again after every update. I have also been informed that if you drag the user library to Finder it will remain visible.

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