5s no apps are not present when set up from previous backup. Any tips thought?

I set up a new 5s via backup to computer of "old" 4s.  Everything went smoothly with picutres transferring, settings, ect.   However none of the apps from the backup transfered.  The new 5s even reflects the number of "pages" of apps from the old settings again no 2nd party apps ie "The Weather Channel" "Google map" ect.  
Any thoughs to tips on what i may have done wrong?  I tried the restore a few times.  I made sure 4s was updated and backed up post update.  Deleted the 5s and retried a few times as well.  No luck thus far. 
Any help would be appreciated

That is because the apps are not part of the backup. The apps are synced back from iTunes.

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