Adobe CS5 & Font Book not playing well together

So I've got an Intel Mac Mini that developed this strange little glitch sometime last week. It seems that when I'm using Illustrator or Photoshop and I scroll through my available fonts, ALL 600+ of my fonts are on. When I go to Font Book to troubleshoot the situation, I see that the majority of them aren't activated (which is how it should be). I tried deleting Adobe & Font Book preference files but it didn't remedy the condition. Any one else with a similar problem or a possible solution?
+(I'm guessing this happened after an Apple software update last week; I've had them activate all of my fonts before, but they showed up as activated in Font Book.)+

Peruse Font Management in OS X and if you want to reset the font databases properly, boot into safe mode and then reboot normally. Details in http://support.apple.com/kb/HT1455 If you're still having issues, contact Adobe and ascertain why their font management's mucked up.

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