Batch input xml files to one flatfile output

I have a receive location where I would need to wait for couple of minutes to get
all the xml files needed to process. Every file in that receive location is of same format.
I would need to produce one output flat file for all the input xml files received within couple of minutes.A mapping need
to be applied on every file before it's converted to a flat file batch.
I tried to batch the input xml files but I am unable to implement the mapping which has to be applied on every input xml
file.
How do I approach this?

Thank you for your response.The transformed xml has got header, body and trailer so when I processed two files by using the map in the receive port. The batched output flat file is as below:
HEADER 27052014                                   
1      HSGbryan_oNSYS300270520141038                                     
2      HSG3851911NSYS150220420141455                      22042014       
3      HSG3851909NSYS150220420141449                      22042014       
4      HSG3853034NSYS150220420141436                      22042014       
TRAILER      4
HEADER 27052014                                   
1      HSGbryan_oNSYS150270520141045                                     
TRAILER      1
However, the required output is
HEADER 27052014                                   
1      HSGbryan_oNSYS300270520141038                                     
2      HSG3851911NSYS150220420141455                      22042014       
3      HSG3851909NSYS150220420141449                      22042014       
4      HSG3853034NSYS150220420141436                      22042014        
5      HSGbryan_oNSYS150270520141045                                     
TRAILER      5
Is there anything we can tweak in to have one header and trailer with the body having sequential row count for the entire flat file batched message?

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