Best way to set up a Mac?

Having used Leopard, I have decided it's no good for my work enviroment so am going to install Tiger on the new iMac's I have just received. But I have noticed a permissions problem with one I'm testing software out on.
What I've done is installed Tiger, and created an Admin User when prompted to create a user. Once the machine has booted I'd set system prefs for Admin User and then I created another account, we'll call this one 'User 1', who is also an administrator. I then log in as User 1, install third party programs like Quark and CS3 etc... and all is fine. I then create another user, 'User 2' and log in as them.
Now User 2 get's the little red icon on most folders. Using the Disk Utility to Verify/Repair Permissions doesn't fix it.
Where am I going wrong? Surely if I install 3rd party applications as the Admin User then User 1 & 2 will get the red/no access icon? Is there a better way to repair permissions than the built in Utility.
Please help!!!

Where are you installing the third party applications? It sounds like they are being installed in the 'User 1' account, rather than the /Applications folder (admin or not, one user normally can not see into another user's folders). Repairing permissions only works for applications that have a file in /Library/Receipts, not on folders in general, so you would need to check the permissions for the folders in question.

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