Color shift on random pages

Hi Everyone,
So I've been scouring the internet and the Adobe forums trying to find out a) what caused this and b) how can I fix it.
I'm working on a document that is set in CMYK and uses vector graphics I have created on the Master Page. Every page uses the Master Page, however, for SOME reason, every other page, the color shifts. So far, all of the problems and solutions out there are in regards to color profiles... but how is this possible when it's the images on the Master page that is being altered, and it's random!
On one page, the image is in what appears to be CMYK, then you go to the next page, and it's RGB! Then RGB on the next but then back to CMYK on the next! I've tried converting my profiles, I've even tried enabling pop up with profile mismatch solutions when it's reopened, I've tried changing the transparency settings from CMYK to RGB and back again, and nothing seems to work. It's really irritating and I'm about to scrap this whole document and start a new one and see if it continues to do that. But I really don't want to because we're 95% with the project.
I would think that what ever it is set to in the Master page, it would remain consistent from one page to the next. And then if it was going from CMYK to RGB on ALL the pages, that's fine, I can fix that, but I can't get the pages to be consistent.
Any help is very appreciative.

Ok, I double checked a lot of things and here is all the info:
The vector file that I am using on the Master page (as a footer graphic) is RGB.
All of the pages have some element overlaying it, some pages only have a text box that drops down to partially cover it (not the color part, a white area), and some have an image. But there is no consistency with this information as it literally just seems to be random pages. If it were text boxes causing the issue, wouldn't it affect all the pages that have text boxes touching this region?
The Transparency blend is set to RGB.
Here are some screenshots.
Here is page 9 how it looks in InDesign showing all of the element box lines:
And page 9 how it looks in the PDF:
Now, here is page 14 in InDesign:
And page 14 in the PDF:
Thanks for your help Rob and Peter!

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