Ctrl+Shift+Option+5 registers as Option+5 in custom emacs build or over ssh

I'm having trouble with custom emacs and emacs over ssh with Leopard. Included below is the text of the bug report I filed with Apple. If anyone has any thoughts or suggestions, I'd love to hear about them.
It won't let me change the OS on this post for some reason, but I'm running Leopard, not Tiger.
In Terminal.app Version 2.0 (237) when I ssh into my Gentoo Linux server and run emacs, or if I run a custom-compiled version of emacs in terminal mode locally, pressing CtrlShift+Option5 (which should bring up "Query replace regexp:" in the bottom input bar) registers as if only Option+5 was pressed.
NOTE: I am using the new aluminum USB-2.0 apple keyboard connected to a MacBook Pro running Leopard 9A581. I have not tested any other hardware configurations.
Steps to reproduce:
1. Download http://ftp.gnu.org/pub/gnu/emacs/emacs-22.1.tar.gz
2. Untar the above
3. cd emacs/mac && ./make-package --self-contained
4. Copy or move Emacs.app to /Applications
5. From Terminal.app run "/Applications/Emacs.app/Contents/MacOS/Emacs -nw"
6. Press CtrlShift+Option5
OR
1. SSH into a linux server and run emacs.
2. Press CtrlShift+Option5
Expected Results:
"Query replace regexp:" should appear in the input line at the bottom of the screen.
Actual Results:
"ESC 5-" shows up. The escape key is an alternate meta-key, so this indicates that the program believes Meta+5 was pushed, where the actual meta-key that I'm using is Option.
I never noticed this problem in any version of Tiger, but it occurs in Leopard.

Perhaps, you should try to reset your preference file to see if it corrects itself. I have posted the instructions at this link:
http://forums.adobe.com/thread/1097046?tstart=0
Good luck.

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