Deleting lines from Sales order for which PO exists

HI all,
We have a setup where MTO/PTO configurable sales order lines are created in SAP from a different application. In this scenario user did create a couple of PTO lines manually in SAP sales order which generated Purchase requisition and a purchase order was created. Since order entry has to be done from the front end application, the line number has been already consumed by the manually created line in SAP. So we need to somehow delete these two PTO lines from the sales order. We tried setting deletion flags to the purchase order lines but still not bale to delete the lines from the sales order.
Could some one come up with some idea?
Thanks
Gopi

Gopi
I think you should work from SD Sales Order first. Did you try rejecting the sales order items without doing anything to the PO.
Also check what requirement routines you have in IMG T codes OVB5 (Maintain Requirements For Purchase And Assembly Orders) and OVB8  (Maintain Requirements For Transfer Of Requirements).
Hope this helps.

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