Deploy web service on apache tomcat

Hi,
I have J2EE application and now I need to expose some of the methods from this application via web service. I am using apache tomcat 6.20 and I am having lots of issues deploying my web service to apache tomcat.
It seem to work fine on gloss fish as I was following the tutorial on netbeans for simple web services.
Any ideas on best practice on building web service on apache tomcat. I've seen many people are having issues with this combination tomcat and jaxws but didn't find anything helpful.
Thanks in advance.

Here is the error I am getting when trying to pass strongly typed objects:
javax.xml.ws.WebServiceException: javax.xml.bind.MarshalException
- with linked exception:
[javax.xml.bind.JAXBException: class java.util.LinkedList nor any of its super class is known to this context.]
        at com.sun.xml.ws.message.jaxb.JAXBMessage.writePayloadTo(JAXBMessage.java:329)
        at com.sun.xml.ws.message.AbstractMessageImpl.writeTo(AbstractMessageImpl.java:142)
        at com.sun.xml.ws.encoding.StreamSOAPCodec.encode(StreamSOAPCodec.java:109)
        at com.sun.xml.ws.encoding.SOAPBindingCodec.encode(SOAPBindingCodec.java:258)
        at com.sun.xml.ws.transport.http.HttpAdapter.encodePacket(HttpAdapter.java:338)
        at com.sun.xml.ws.transport.http.HttpAdapter.access$100(HttpAdapter.java:93)
        at com.sun.xml.ws.transport.http.HttpAdapter$HttpToolkit.handle(HttpAdapter.java:480)
        at com.sun.xml.ws.transport.http.HttpAdapter.handle(HttpAdapter.java:244)
        at com.sun.xml.ws.transport.http.servlet.ServletAdapter.handle(ServletAdapter.java:135)
        at com.sun.xml.ws.transport.http.servlet.WSServletDelegate.doGet(WSServletDelegate.java:129)
        at com.sun.xml.ws.transport.http.servlet.WSServletDelegate.doPost(WSServletDelegate.java:160)
        at com.sun.xml.ws.transport.http.servlet.WSServlet.doPost(WSServlet.java:75)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:637)
        at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
        at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
        at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
        at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
        at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
        at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
        at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
        at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
        at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)
        at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)
        at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
        at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)
        at java.lang.Thread.run(Thread.java:619)
Caused by: javax.xml.bind.MarshalException
- with linked exception:
[javax.xml.bind.JAXBException: class java.util.LinkedList nor any of its super class is known to this context.]
        at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:279)
        at com.sun.xml.bind.v2.runtime.BridgeImpl.marshal(BridgeImpl.java:100)
        at com.sun.xml.bind.api.Bridge.marshal(Bridge.java:141)
        at com.sun.xml.ws.message.jaxb.JAXBMessage.writePayloadTo(JAXBMessage.java:321)
        ... 25 more
Caused by: javax.xml.bind.JAXBException: class java.util.LinkedList nor any of its super class is known to this context.
        at com.sun.xml.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:242)
        at com.sun.xml.bind.v2.runtime.XMLSerializer.reportError(XMLSerializer.java:257)
        at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:649)
        at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
        at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
        at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
        at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:322)
        at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:681)
        at com.sun.xml.bind.v2.runtime.property.SingleElementNodeProperty.serializeBody(SingleElementNodeProperty.java:150)
        at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:322)
        at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:681)
        at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:274)
        ... 28 more
Caused by: javax.xml.bind.JAXBException: class java.util.LinkedList nor any of its super class is known to this context.
        at com.sun.xml.bind.v2.runtime.JAXBContextImpl.getBeanInfo(JAXBContextImpl.java:566)
        at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:644)
        ... 37 more

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    *     at weblogic.management.deploy.classdeployment.ClassDeploymentManager.access$000(ClassDeploymentManager.java:54)*
    *     at weblogic.management.deploy.classdeployment.ClassDeploymentManager$1.run(ClassDeploymentManager.java:214)*
    *     at weblogic.security.acl.internal.AuthenticatedSubject.doAs(AuthenticatedSubject.java:321)*
    *     at weblogic.security.service.SecurityManager.runAs(SecurityManager.java:120)*
    *     at weblogic.management.deploy.classdeployment.ClassDeploymentManager.invokeClassDeployment(ClassDeploymentManager.java:207)*
    *     at weblogic.management.deploy.classdeployment.ClassDeploymentManager.runStartupsBeforeAppDeployments(ClassDeploymentManager.java:149)*
    *     at weblogic.management.deploy.classdeployment.ClassDeploymentService.start(ClassDeploymentService.java:20)*
    *     at weblogic.t3.srvr.SubsystemRequest.run(SubsystemRequest.java:64)*
    *     at weblogic.work.ExecuteThread.execute(ExecuteThread.java:207)*
    *     at weblogic.work.ExecuteThread.run(ExecuteThread.java:176)*nerInvoker.java:60)*
    *     at weblogic.deploy.internal.targetserver.AppDeployment.prepare(AppDeployment.java:141)*
    *     at weblogic.management.deploy.internal.DeploymentAdapter$1.doPrepare(DeploymentAdapter.java:39)*
    *     at weblogic.management.deploy.internal.DeploymentAdapter.prepare(DeploymentAdapter.java:191)*
    *     at weblogic.management.deploy.internal.AppTransition$1.transitionApp(AppTransition.java:21)*
    *     at weblogic.management.deploy.internal.ConfiguredDeployments.transitionApps(ConfiguredDeployments.java:240)*
    *     at weblogic.management.deploy.internal.ConfiguredDeployments.prepare(ConfiguredDeployments.java:165)*
    *     at weblogic.management.deploy.internal.ConfiguredDeployments.deploy(ConfiguredDeployments.java:122)*
    *     at weblogic.management.deploy.internal.DeploymentServerService.resume(DeploymentServerService.java:180)*
    *     at weblogic.management.deploy.internal.DeploymentServerService.start(DeploymentServerService.java:96)*
    *     at weblogic.t3.srvr.SubsystemRequest.run(SubsystemRequest.java:64)*
    *     at weblogic.work.ExecuteThread.execute(ExecuteThread.java:207)*
    *     at weblogic.work.ExecuteThread.run(ExecuteThread.java:176)*
    *>*
    *####<1 mars 2012 19 h 07 CET> <Error> <Deployer> <ACER-PC> <AdminServer> <[ACTIVE] ExecuteThread: '1' for queue: 'weblogic.kernel.Default (self-tuning)'> <<WLS Kernel>> <> <> <1330625251045> <BEA-149605> <Failed to create App/Comp mbeans for AppDeploymentMBean vaccination#V2.0. Error - weblogic.management.DeploymentException: C:\JDeveloper\mywork\VaccinCapt initial\deploy\vaccination.ear (Le fichier spécifié est introuvable) with : C:\JDeveloper\mywork\VaccinCapt initial\deploy\vaccination.ear.*
    weblogic.management.DeploymentException: C:\JDeveloper\mywork\VaccinCapt initial\deploy\vaccination.ear (Le fichier spécifié est introuvable) with : C:\JDeveloper\mywork\VaccinCapt initial\deploy\vaccination.ear
    *     at weblogic.application.internal.EarDeploymentFactory.findOrCreateComponentMBeans(EarDeploymentFactory.java:193)*
    *     at weblogic.application.internal.MBeanFactoryImpl.findOrCreateComponentMBeans(MBeanFactoryImpl.java:48)*
    *     at weblogic.application.internal.MBeanFactoryImpl.createComponentMBeans(MBeanFactoryImpl.java:110)*
    *     at weblogic.application.internal.MBeanFactoryImpl.initializeMBeans(MBeanFactoryImpl.java:76)*
    *     a
    *####<1 mars 2012 19 h 07 CET> <Notice> <Server> <ACER-PC> <AdminServer> <[ACTIVE] ExecuteThread: '1' for queue: 'weblogic.kernel.Default (self-tuning)'> <<WLS Kernel>> <> <f0ed2a6d7fb07688:-641bbda5:135cf7208d9:-8000-0000000000000008> <1330625252247> <BEA-002613> <Channel "Default[1]" is now listening on 192.168.1.2:7001 for protocols iiop, t3, ldap, snmp, http.>*
    n(BaseLifecycleFlow.java:140)
    *>*
    *####<1 mars 2012 19 h 15 CET> <Warning> <netuix> <ACER-PC> <AdminServer> <[ACTIVE] ExecuteThread: '0' for queue: 'weblogic.kernel.Default (self-tuning)'> <AppN> <> <f0ed2a6d7fb07688:-641bbda5:135cf7208d9:-8000-0000000000000024> <1330625732284> <BEA-423420> <Redirect is executed in begin or refresh action. Redirect url is /console/console.portal?_nfpb=true&_pageLabel=AppApplicationOverviewPage&AppApplicationOverviewPortlethandle=com.bea.console.handles.AppDeploymentHandle%28%22com.bea%3AName%3DVaccinCapt_application1%23V2.0%2CType%3DAppDeployment%22%29.>*
    the Admin server consol run correctly localhost:7001/console
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    You can ask the one who installed the server...
    Or run the quickstart utility and try to install some other extension. In this process you see all installed extensions grayed out.
    Our you open the admin console and check which libraries are installed.
    Timo

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