External hard drive folders disappear

My external 2 Terabyte Seagate hard drive keeps loosing folders. This has happened twice now. Everything is fine on Friday, I shut down for the weekend, then I return on Monday and some of the folders are missing. Today it happened later in the day, apparently after a Time Machine Backup, rather than first thing in the AM after booting. I am backing up to a different 3T Seagate external hard drive, both are Firewire 800. When I run Disk Utility it tells me everything is fine. Naturally, it fails to mention there are ten years of archives missing!
The first time this happened I got lucky and noticed some folders were missing. I searched the Web but did not find anything useful or relevant. My firmware on the hard drives is up to date. So, I totally erased the external, repartitioned using GUID, and did a restore from Time Machine. Everything seemed to work for week or so. Then today once again, one partition out of three is missing folders, the same partition as last time. It was fine at 4:43, based on Time Machine time line, but at 5:30 I am missing the bulk of the info on that partition.
I am running 10.9.5 on a Mac Mini. Does anyone know what is going on?
Thank you.

My external 2 Terabyte Seagate hard drive keeps loosing folders. This has happened twice now. Everything is fine on Friday, I shut down for the weekend, then I return on Monday and some of the folders are missing. Today it happened later in the day, apparently after a Time Machine Backup, rather than first thing in the AM after booting. I am backing up to a different 3T Seagate external hard drive, both are Firewire 800. When I run Disk Utility it tells me everything is fine. Naturally, it fails to mention there are ten years of archives missing!
The first time this happened I got lucky and noticed some folders were missing. I searched the Web but did not find anything useful or relevant. My firmware on the hard drives is up to date. So, I totally erased the external, repartitioned using GUID, and did a restore from Time Machine. Everything seemed to work for week or so. Then today once again, one partition out of three is missing folders, the same partition as last time. It was fine at 4:43, based on Time Machine time line, but at 5:30 I am missing the bulk of the info on that partition.
I am running 10.9.5 on a Mac Mini. Does anyone know what is going on?
Thank you.

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