File Importer Problem

I am working with footage from a DVD converted by a program called "Handbrake" into MP4.The message: "File importer detected an inconsistency in the file structure of [file name]" appears in the events monitor (yellow triangle bottom right of workspace.) I have a yellow line that turns to red above the timeline. Jerky playback and poor video quality. What should I do from here? I tried re-interpreting and conforming the square pixel footage to DV/NTSC with no results. The aspect ratio is 698x466 but there is no way to adjust (that I could see).
May or may not be related but Premiere has been stalling regularly upon program start-up and closing. This with all my projects.
My system is 64-bit Vista 8 GB RAM, and includes a Matrox MX02 Mini
File Path: F:\Premiere Projects\20090901 Marlon GC\Marlon Set 2.mp4
Type: XDCAM-EX Movie
File Size: 10.1 GB
Image Size: 698 x 466
Pixel Depth: 32
Frame Rate: 29.97
Source Audio Format: 48000 Hz - compressed - Stereo
Project Audio Format: 48000 Hz - 32 bit floating point - Stereo
Total Duration: 00:58:57:06
Average Data Rate: 2.9 MB / second
Pixel Aspect Ratio: 0.8901

The file improter error message came when I imported the files.
I don't have the original DVD or its folder, just the MP4 files that were converted by Handbrake sometime last year. No BPAV folder, although I did not know I could import a DVD folder. Anyway, that's all I have - the dimensions are 698x466 and it plays the same in the Adobe Media Player as in the Matrox Player. I suppose i can get with Matrox as well since it's their box (MX02 Mini). 

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