Files appear to be missing from my hard drive - FCP 5.1.4

I am having an issue with my external hard drive(has both USB and FIREWIRE). I had downloaded P2 files to my hard drive, checked and double checked to make sure they were there(using FCP). Then I ejected the hard drive to reconnect it using Firewire this time. I got the "device removal" warning. I reconnected it using Firewire, all the files were there. All was good. I started a new project folder on the hard drive and set my capture scratch to it. I began importing P2 files from this hard drive (firewire) and another hard drive (USB). Suddenly all my files, except for the new project folder, seemed to have disappeared. The info on the hard drive says that the space is still being used. It says I have 340G left on a 500G hard drive.
Help!

Diskwarrior. Get it use it.
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