FLEX Builder Pro 3 New Flex Project cannot configure J2EE

I have FLEX Builder Pro 3 installed on a Windows XP machine.  LiveCycle Data Services is installed (with Tomcat) on a Linux RHEL 5 machine.  When trying to create a new FLEX project and configuring a J2EE server am very confused on what to put in Root Folder and Root URL.  I have tried various paths on the Root Folder (with a drive mapped through windows and also with just using the servername) and keep getting the error message:
Invalid root. The WEB-INF/flex folder must contain either flex-config.xml or services-config.xml.
I've located the flex-confing file in the tomcat5\webapps\ROOT\WEB-INF directory, but still get the error.
Please any help would be greatly appreciated.

Are your new classes referenced from the old code? Mxmlc employs a questionable form of "as-needed" linking, so classes that are not referenced from the main application are not even compiled. This referencing requirement is recursive; that is, any classes that are to be included have to be referenced from the main application, or from classes referenced by the main application, or from classes referenced by classes referenced by the main application, and so on. But if your new classes are not referenced at all from the old code, they will be ignored.

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