Folders on desktop vanishing/Empty folders not deleting

Heyo, all
I've come across a wierdness on my Mac and I'm stumped as to how to deal with it.
I have a folder on my desktop that I can rename and move to the trash but that I cannot delete. It shows as empty in the Finder and via Terminal but still tells me that it is not empty and will not delete. Also, any time I put any thing into this folder it will vanish. It's still there if I look via terminal but does not display via Finder. It will show up if I reboot then vanishes again when I try and do anything with it. For example, if I open the folder, it will display an empty folder, then vanish.
At first it was just an annoyance but now another folder has taken on the same characteristics. I'm not sure of what is going on but this disturbs me, greatly.
I have tried applications that are supposed to force delete items but have failed to achieve success.
Any advice on how to get rid of these folders and restore the integrity of my desktop would be appreciated!
Thanks,
V

Since you mentioned that you looked at it with the Terminal, I will take the liberty to respond with a Terminal solution.
Open the terminal and type the following:
sudo rm -Rf ~/Desktop/<StrangeFolder>
and press enter. Of course, substitute the name of your strange folder(s) for "<StrangeFolder>".
This command will definitely remove those folders. Make sure you have it exactly right. This is one of those commands that will do exactly what you tell it. If typed incorrectly (such as with an extra space or something), it can and will remove your Desktop and entire home directory. Years ago I deleted (half) my home directory at work this way. Luckily, we had backups. You've been warned.
"With great power comes great responsibility"

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