I am migrating to a new iMac via TimeMachine back up.  My iPhoto libraries are on external drive.  I'd like to migrate only the internal hard drive data to the new internal Drive then just plug in iPhoto library drive.  Is this going be a problem?

I am migrating to a new iMac via TimeMachine back up.  My iPhoto libraries are on an external drive.  Both drives are backed up on Time Machine.  I'd like to migrate only the old internal hard drive data to the new internal Drive and then just plug in iPhoto library drive to the new iMac.  This would save having to transfer several hundred GBs of data.  Will this work using Set Up Assistant?

Your user account on the new Mac must have a different UID than on the old one.  See the pink box in Problems after using Migration Assistant for an explanation.
You'll need to change the permissions on the iPhoto library on the external HD.  Do a Get Info on it, click the padlock at the bottom of the Sharing & Permissions section of the Info window and enter your Admin password. 
Then click the plus sign, select the user account you want on the next screen, and click Select.   Then change Read only to Read & Write for that user via the little arrows.  Finally, click the "gear" icon and select Apply to enclosed items.  That may take a few mintutes on a large library.

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