I upgraded to iOS 5 and lost ALL of my apps even though during the process they were backed up to my Itunes. Can I get them back?

I upgraded to iOS 5 and lost ALL of my apps even though they were backed up to Itunes during the process.  Whenever I plug my ipad into my computer the apps that appear in Itunes are from my ipod touch.  How can I get my apps back without purchasing them again?

On your iPad and iPod touch tap Settings > Store
Make sure Music is switched On under Automatic Downloads.
Now restart your iPad and your iPod touch.
Hold the On/Off Sleep/Wake button down until the red slider appears. Slide your finger across the slider to turn off iPhone. To turn iPhone back on, press and hold the On/Off Sleep/Wake button until the Apple logo appears.
You can re download iTunes purchases for free if necessary >  Downloading past purchases from the App Store, iBookstore, and iTunes Store

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