I want to clean all of the cookies and bugs that are in my computer causing it to be slow. What program should I use that is safe and won't mess up my computer?

I want to clean all of the cookies and bugs that are in my computer causing it to be slow. What program should I use that is safe and won't mess up my computer?

Problem description:
I would like to clean up my computer. Its beginning to run slow and I believe cookies and bugs are apart of the reason.
EtreCheck version: 2.0.6 (91)
Report generated October 26, 2014 at 4:59:31 PM EDT
Hardware Information: ℹ️
  MacBook Air (13-inch, Early 2014) (Verified)
  MacBook Air - model: MacBookAir6,2
  1 1.4 GHz Intel Core i5 CPU: 2-core
  4 GB RAM Not upgradeable
  BANK 0/DIMM0
  2 GB DDR3 1600 MHz ok
  BANK 1/DIMM0
  2 GB DDR3 1600 MHz ok
  Bluetooth: Good - Handoff/Airdrop2 supported
  Wireless:  en0: 802.11 a/b/g/n/ac
Video Information: ℹ️
  Intel HD Graphics 5000 -
  Color LCD 1440 x 900
System Software: ℹ️
  OS X 10.9.5 (13F34) - Uptime: 13 days 2:41:41
Disk Information: ℹ️
  APPLE SSD SD0128F disk0 : (121.33 GB)
  S.M.A.R.T. Status: Verified
  EFI (disk0s1) <not mounted> : 210 MB
  Macintosh HD (disk0s2) /  [Startup]: 120.47 GB (70.38 GB free)
  Recovery HD (disk0s3) <not mounted>  [Recovery]: 650 MB
USB Information: ℹ️
  Apple Internal Memory Card Reader
  Apple Inc. iPhone
  General USB Flash Disk 16.13 GB
  S.M.A.R.T. Status: Verified
  MSD (disk1s1) /Volumes/MSD : 16.13 GB (11.18 GB free)
  Apple Inc. BRCM20702 Hub
  Apple Inc. Bluetooth USB Host Controller
Thunderbolt Information: ℹ️
  Apple Inc. thunderbolt_bus
Gatekeeper: ℹ️
  Mac App Store and identified developers
Kernel Extensions: ℹ️
  /Library/Extensions
  [loaded] foo.tap (1.0) Support
  [loaded] foo.tun (1.0) Support
Startup Items: ℹ️
  tap: Path: /Library/StartupItems/tap
  tun: Path: /Library/StartupItems/tun
  Startup items are obsolete and will not work in future versions of OS X
Problem System Launch Daemons: ℹ️
  [failed] com.apple.wdhelper.plist
Launch Daemons: ℹ️
  [loaded] com.adobe.fpsaud.plist Support
  [running] com.perion.searchprotectd.plist Support
User Launch Agents: ℹ️
  [loaded] com.genieo.completer.download.plist Support
  [loaded] com.genieo.completer.ltvbit.plist Support
  [running] com.genieo.completer.update.plist Support
  [loaded] com.google.keystone.agent.plist Support
  [invalid?] com.jdibackup.ZipCloud.autostart.plist Support
  [running] com.zeobit.MacKeeper.Helper.plist Support
User Login Items: ℹ️
  iTunesHelper Application (/Applications/iTunes.app/Contents/MacOS/iTunesHelper.app)
Internet Plug-ins: ℹ️
  DirectorShockwave: Version: 12.1.3r153 - SDK 10.6 Support
  Flash Player: Version: 15.0.0.189 - SDK 10.6 Support
  FlashPlayer-10.6: Version: 15.0.0.189 - SDK 10.6 Support
  JavaAppletPlugin: Version: 14.9.0 - SDK 10.7 Check version
  QuickTime Plugin: Version: 7.7.3
  Default Browser: Version: 537 - SDK 10.9
User Internet Plug-ins: ℹ️
  TroviNPAPIPlugin: Version: 1.0 - SDK 10.9 Support
Safari Extensions: ℹ️
  Trovi Search for Safari (Disabled)
3rd Party Preference Panes: ℹ️
  Flash Player  Support
Time Machine: ℹ️
  Time Machine not configured!
Top Processes by CPU: ℹ️
      53% mds
      9% WindowServer
      3% mds_stores
      3% storeagent
      2% hidd
Top Processes by Memory: ℹ️
  920 MB mds
  31 MB com.apple.WebKit.WebContent
  30 MB Messages
  29 MB Safari
  21 MB WindowServer
Virtual Memory Information: ℹ️
  31 MB Free RAM
  713 MB Active RAM
  681 MB Inactive RAM
  1.09 GB Wired RAM
  17.85 GB Page-ins
  1.95 GB Page-outs

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