Import from Aperture Created Extra Collections (2 for 1)

I used the Aperture Import plugin to import my Library to start fresh with Lightroom 5. It created many extra "collections" that I now don't know what to do with. It would take me hours to change the hierarchy in Lightroom now that this has occured.
Sample Aperture Hierarchy:
PERSONAL FOLDER
     FAMILY FOLDER
          SISTER PROJECT - contains photos
          DAD PROJECT - contains photos
          MOM PROJECT - contains photos
How they transferred to Lightroom 5 Hierarchy using SISTER as example:
PERSONAL COLLECTION SET
     FAMILY COLLECTION SET
          SISTER COLLECTION SET
               SISTER COLLECTION (NAMED "PROJECT PHOTOS") - contains photos
Essentially, it duplicated efforts and created two (a collection set and a collection) for every one project in aperture. (see SISTER above)
It did this for hundreds of collection sets/projects! It seems in order to correct this I would have to go back and remove the last COLLECTION SET for every COLLECTION and Change it to a COLLECTION INSTEAD (renaming it from "PROJECT PHOTOS" to the COLLECTION NAME). I tried some of this but it didn't seem to want to let me move the COLLECTIONS named "Project Photos" into the COLLECTION SET?
My questions are:
Is there a way to change or clean up my aperture library so it won't import this way? (Considering just deleting the Lightroom Catalog and starting from scratch with a new import). I have to have the sub categories for organization.
Is there an easy way to change a collection set to a collection and have all the pics show up there. I tried moving photos from the collection into collection sets and it would not let me.
Is there a way to choose/customize how it imports from Aperture and select whether things = collection sets or collections?
Should I use regular import instead? Will that work differently and if so what are the steps?
What is the correct hierarchy based on the Aperture example above as to how I should be organizing my photos?
Finally, In terms of my CATALOGUE; I am not thrilled that it brought everything in by day (3/13/2015, 3/12/2015) into my catalogue! Is there an option to tell it HOW to import? Say by month? Will I have to keep up this sequence every time I import now? (I plan to import/sync with SmugMug from now on: Iphone to SmugMug to Lightroom)
Thanks and any help is appreciated!

and obviously that's not possible directly from Aperture (why not?),
Obviously it is, consult your Aperture Manual. But here’s a hint: Start with File -> New -> Book...
What do I do wrong?
You’re using the iPhoto command: Show Aperture Library, correct?
When you do this you’re accessing your Aperture Previews. IF you want to use better quality images either a: use better quality Previews in Aperture, or export the images from Aperture and import to iPhoto.
Regards
TD

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