Interlaced footage not rendering correctly

Hi Everyone,
I have made a series of 10 second ads that all share the same graphical ending that contains a logo and text that flies in and then settles. The ending was generated purely in After Effects but is a little time consuming to render so I created a pre-rendered quicktime movie in pro-res 4444 as the ending needs an alpha channel. This pre-render was rendered as a pal interlaced upper field first clip, I have re-imported the render which is correctly interpreted as upper field first and replaced the source in my new comps. When I render out a new ad as interlaced the end frames after the logo has settled appear to have been rendered as interlaced interpreted footage in a progressive comp and give me jaggy edges instead of smooth aliased ones around the logo and text although the preceding motion seems smooth.
I have had to revert to the original un-rendered composition thus drastically increasing my render times but the output is correct.
To check wether this is a codec issue I re-rendered the ending to Animation codec but this produces the same results.
Has anyone else experienced anything like this ?
I am using After Effects CC 2014 on Mac OS X 10.9.4
Cheers
Nic

OK, I have partially solved this issue. I had forgotten that I had sped the duration of the ending up by 50% so as to fit correctly. When I use the original comp (sped up in the master comp) it renders correctly but when using the original length interlaced pre-rendered file (which is then sped up by 50% in the master comp) I get the error I described in the OP.
What this seems to mean is After Effects is only using a single field of each frame of an interlaced movie if you speed it up using AE's time stretch. Thus effectively halving the resolution of the frame and producing the jaggy effect visible on the curves of the text.
Is that how AE has always done this and is there a way around it with frame blending or such? Although I have rendered out a clip that was sped up before rendering that now works correctly when I re-import it I am concerned about using time stretch on other interlaced footage in the future.
cheers
Nic

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