JDK upgrade confusion

I had up-to-date JRE and an older JDK5 and wanted to get latest JDK.
I installed jdk-1_5_0_08-nb-5_0-win-ml.exe. There is now two JDK directories JDK1.5.0_0[18] , jre1.5.0 and jre1.5.0_0[12468].
But the environment variables did not get changed.
CLASSPATH=.;C:\Program Files\Java\jre1.5.0_06\lib\ext\QTJava.zip
javabin=C:\Program Files\Java\jdk1.5.0_01\bin
JAVA_HOME=C:\PROGRA~1\Java\jdk1.5.0_01
QTJAVA=C:\Program Files\Java\jre1.5.0_06\lib\ext\QTJava.zip
I was expecting one of the updates to correct the environment variables. Or at least a document that explains what needs to be done. I am confused by the JRE vs JDK and what should point to which.
Can anyone clarify this or point to a doc that does?

Java installs do not create or update MS's environment variables - do that manually, as explained in the Java Installation Instructions.
And note that your installed the Netbeans - Java combination package,
jdk-1_5_0_08-nb-5_0-win-ml.exe
Uninstall all but the most recent JDK and JRE version, and point the variables to them.

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