Listing Related Files in the Related Files Bar

I've been enjoying the new ability in CS4 to see the source code and related files in the file bar, but am puzzled by an inconsistency. The related files are not always listed in the bar.
My sites are fairly small and simple. The related files are usually limited to javascript and css.  In some sites the related files are listed in the file bar along with the source code "button", and in other sites only the "button" appears. The behavior is consistent across the site. All related files are linked in the head area, in the same way, and all the links are good--the pages work like they are supposed to. The related files are usually at the same level as the source code. I haven't been able to find a setting in the program that would turn the listing on or off, or a reference in a discussion thread. I've tried recreating the site cache, and redefining the site. Neither changed the behavior.
Does anyone know why related files are not always listed?

I figured it out.
There were no significant differences in the related file references, and no conditional comments. Poking around, trying all sorts of things, I noticed that the related files could be listed from the View menu, which meant Dreamweaver knew about them. But they could not be accessed by clicking on the listing--Dreamweaver complained of an invalid path, starting at the C: drive level. At one point it locked up.
All of the sites that could not list related files had local folders with a # sign in a high-level folder name (an obviously poor idea picked up from work!). Those folders were used in the local site definition. Once that # sign was removed, and the cache recreated, the related files showed up.
Thanks very much for the tip on the includes. I'm just beginning to work with them, and will be careful to set them up properly.
And thanks very much for helping me think the problem through. It was getting pretty frustrating!

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