LOG_FILE_NOT_FOUND bug possible in current BDB JE?

I've seen references to the LOG_FILE_NOT_FOUND bug in older BDB JE versions (4.x and 5 <= 5.0.34(, however, I seem to be suffering something similar with 5.0.48.
I have a non-transactional, deferred-write DB that seems to have gotten itself into an inconsistent state. It was fine loading several million records, but after ~8 hours of operation, bailed out with:
com.sleepycat.je.EnvironmentFailureException: Environment invalid because of previous exception: (JE 5.0.55) /tmp/data/index fetchTarget of 0x9f1/0x24d34eb parent IN=44832 IN class=com.sleepycat.je.tree.BIN lastFullVersion=0xdcf/0x5a96c91 lastLoggedVersion=0xdcf/0x5a96c91 parent.getDirty()=true state=0 LOG_FILE_NOT_FOUND: Log file missing, log is likely invalid. Environment is invalid and must be closed.
     at com.sleepycat.je.tree.IN.fetchTarget(IN.java:1429)
     at com.sleepycat.je.tree.BIN.fetchTarget(BIN.java:1251)
     at com.sleepycat.je.dbi.CursorImpl.fetchCurrent(CursorImpl.java:2229)
     at com.sleepycat.je.dbi.CursorImpl.getCurrentAlreadyLatched(CursorImpl.java:1434)
     at com.sleepycat.je.Cursor.searchInternal(Cursor.java:2716)
     at com.sleepycat.je.Cursor.searchAllowPhantoms(Cursor.java:2576)
     at com.sleepycat.je.Cursor.searchNoDups(Cursor.java:2430)
     at com.sleepycat.je.Cursor.search(Cursor.java:2397)
     at com.sleepycat.je.Database.get(Database.java:1042)
     at com.xxxx.db.BDBCalendarStorageBackend.indexCalendar(BDBCalendarStorageBackend.java:95)
     at com.xxxx.indexer.TicketIndexer.indexDeltaLogs(TicketIndexer.java:201)
     at com.xxxx.indexer.DeltaLogLoader.run(DeltaLogLoader.java:87)
Caused by: java.io.FileNotFoundException: /tmp/data/index/000009f1.jdb (No such file or directory)
     at java.io.RandomAccessFile.open(Native Method)
     at java.io.RandomAccessFile.<init>(RandomAccessFile.java:216)
     at java.io.RandomAccessFile.<init>(RandomAccessFile.java:101)
     at com.sleepycat.je.log.FileManager$6.<init>(FileManager.java:1282)
     at com.sleepycat.je.log.FileManager.openFileHandle(FileManager.java:1281)
     at com.sleepycat.je.log.FileManager.getFileHandle(FileManager.java:1147)
     at com.sleepycat.je.log.LogManager.getLogSource(LogManager.java:1102)
     at com.sleepycat.je.log.LogManager.getLogEntry(LogManager.java:808)
     at com.sleepycat.je.log.LogManager.getLogEntryAllowInvisibleAtRecovery(LogManager.java:772)
     at com.sleepycat.je.tree.IN.fetchTarget(IN.java:1412)
     ... 11 more
Subsequent opens/use on the DB pretty much instantly yield the same error. I tried upgrading to 5.0.55 (hence the ver in the output above) but still get the same error.
As a recovery attempt, I used DbDump to try to dump the DB, however, it failed with a similar error. Enabling salvage mode enabled me to successfuly dump it, however, reloading it into a clean environment by programmatically running DbLoad.load() (so I can setup my env) caused the following error (after about 30% of the DB has restored):
Exception in thread "main" com.sleepycat.je.EnvironmentFailureException: (JE 5.0.55) Node 11991 should have been split before calling insertEntry UNEXPECTED_STATE: Unexpected internal state, may have side effects. fetchTarget of 0x25/0x155a822 parent IN=2286 IN class=com.sleepycat.je.tree.IN lastFullVersion=0x3e/0x118d8f6 lastLoggedVersion=0x3e/0x118d8f6 parent.getDirty()=false state=0
     at com.sleepycat.je.EnvironmentFailureException.unexpectedState(EnvironmentFailureException.java:376)
     at com.sleepycat.je.tree.IN.insertEntry1(IN.java:2326)
     at com.sleepycat.je.tree.IN.insertEntry(IN.java:2296)
     at com.sleepycat.je.tree.BINDelta.reconstituteBIN(BINDelta.java:216)
     at com.sleepycat.je.tree.BINDelta.reconstituteBIN(BINDelta.java:144)
     at com.sleepycat.je.log.entry.BINDeltaLogEntry.getIN(BINDeltaLogEntry.java:53)
     at com.sleepycat.je.log.entry.BINDeltaLogEntry.getResolvedItem(BINDeltaLogEntry.java:43)
     at com.sleepycat.je.tree.IN.fetchTarget(IN.java:1422)
     at com.sleepycat.je.tree.Tree.searchSubTreeUntilSplit(Tree.java:1786)
     at com.sleepycat.je.tree.Tree.searchSubTreeSplitsAllowed(Tree.java:1729)
     at com.sleepycat.je.tree.Tree.searchSplitsAllowed(Tree.java:1296)
     at com.sleepycat.je.tree.Tree.findBinForInsert(Tree.java:2205)
     at com.sleepycat.je.dbi.CursorImpl.putInternal(CursorImpl.java:834)
     at com.sleepycat.je.dbi.CursorImpl.put(CursorImpl.java:779)
     at com.sleepycat.je.Cursor.putAllowPhantoms(Cursor.java:2243)
     at com.sleepycat.je.Cursor.putNoNotify(Cursor.java:2200)
     at com.sleepycat.je.Cursor.putNotify(Cursor.java:2117)
     at com.sleepycat.je.Cursor.putNoDups(Cursor.java:2052)
     at com.sleepycat.je.Cursor.putInternal(Cursor.java:2020)
     at com.sleepycat.je.Database.putInternal(Database.java:1324)
     at com.sleepycat.je.Database.put(Database.java:1194)
     at com.sleepycat.je.util.DbLoad.loadData(DbLoad.java:544)
     at com.sleepycat.je.util.DbLoad.load(DbLoad.java:414)
     at com.xxxx.db.BDBCalendarStorageBackend.loadBDBDump(BDBCalendarStorageBackend.java:254)
     at com.xxxx.cli.BDBTool.run(BDBTool.java:49)
     at com.xxxx.cli.AbstractBaseCommand.execute(AbstractBaseCommand.java:114)
     at com.xxxx.cli.BDBTool.main(BDBTool.java:69)
The only other slightly exotic thing I'm using is a custom partial BTree comparator, however, it quite happily loaded/updated literally tens of millions of records for hours before the FileNotFound error cropped up, so it seems unlikely that would be the cause.
Any ideas?
Thanks in advance,
fb.

Thanks heaps to Mark for working through this with me.You're welcome. Thanks for following up and explaining it for the benefit of others. And I'm very glad it wasn't a JE bug!
My solution is to switch to using a secondary database for providing differentiated "uniqueness" vs "ordering".An index for uniqueness may be a good solution. But as you said in email, it adds significant overhead (memory and disk). This overhead can be minimized by keeping your keys (primary and secondary) as small as possible, and enabling key prefixing.
I'd also like to point out that adding a secondary isn't always the best choice. For example, if the number of keys with the same C1 value is fairly small, another way of checking for uniqueness (when inserting) is to iterate over them, looking for a match on C1:C3. The cost of this iteration may be less than the cost of maintaining a uniqueness index. To make this work, you'll have to use Serializable isolation during the iteration, to prevent another thread from inserting a key in that range.
If you're pushing the performance limits of your hardware, it may be worth trying more than one such approach and comparing the performance. If performance is not a big concern, then the additional index is the simplest approach to get right.
--mark                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           

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    ++Please click KUDOS / White thumb to say thanks
    ++Please click ACCEPT AS SOLUTION to help others, find this solution faster
    **I'm a Volunteer, I do not work for HP**

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