Logging existing mov file

I'm working on a project which, for reasons beyond my control, is composed of several 20-30 min long .mov files and has quickly become a media management nightmare. So I have two questions:
First, and most importantly Is there a way to essentially "log" the clips and recreate what happens if you log and capture correctly, as in creating files like 13A_1 and 13A_2 instead of TAPE 2? Am I stuck using subclips or exporting subclips one by one as different .mov files?
If there is a way to log existing files and create smaller mov files, then it makes my second question irrelevant, but I'll ask it anyway.
The footage was being edited on an iMac and I transferred it to my external hard drive so I could work from my MacBook Pro. Because I'm a total genius, my external is formatted to the setting where it will not transfer files larger than 4gigs. Several of the long mov files were larger than 4gigs. I didn't want to reformat my external and lose all of my back-up files from other stuff, so I split the clips roughly in half and exported them to my hard drive as two separate files. Naturally, FCP is freaking out because the original files aren't present. I know I can reconstruct stuff by hand using the new files and the in/out timecode from the old files, but I was wondering if there's a quicker and easier way to reconnect the footage since it is literally the exact same file, just in two parts.
If there is a way to log existing files and make smaller clips, I will just log them on the iMac and then re-import them to my external.
As a side note, the footage was originally PAL and then got converted to NTSC, but that hasn't been a problem.

Break your long clips into sub clips (IN FCP) and then use the MEDIA MANAGER to MAKE INDEPENDENT.
Breaking clips up in the FINDER means that you break any connection FCP has to them, and it cannot connect the clips in the Browser to those new clips. You'd need to reimport them and make new clips.
Shane

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    I know this part can really suck if you're not used to audio editing, but at this point, there is little other choice.
    6.) Once you are done with this, export your newly pieced together audio track.
    7.) Now open iMovie and create a NEW project. Re-import the video that you exported earlier that has the messed up audio. This might take a while, so just be patient.
    8.) Then right click the clip and select "Detach Audio". This will do just that - allowing you to edit the audio separately from the video. Now delete this audio.
    9.) Now, import the new, perfect audio track that we just made and make sure that it starts at the start of the project. Make sure it's in sync and that everything works.
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    YOU'RE FINALLY DONE!!!
    I know this entire process *****, but if you're that far into your project, there is little else that you can do. Now you've learned your lesson:
    DON'T USE IMOVIE EVER AGAIN.
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