LR4 Flag Sorting in Collections no longer working

I get that the flags are carring over to collections now, when before they didn't.  In lightroom 4 beta, I didn't have problems tagging some of the flagged images as regects and then filtering the results from those left flagged, to those changed to rejects.  Now that I have upgraded, none of my flag filtering is working.  If I select flagged, i get nothing.  If i select rejects, I get nothing.  How can I fix this?  As a wedding photographer with thousands of images in a collection, this will be quite frustrating to go back through all these images to manually move the rejects out of the way.

http://forums.adobe.com/message/4250910#4250910

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