Movies in Iphoto and Aperture wont play

After updating to Iphoto 9.3 and Aperture 3.3, whenever i open a video i get this message "A necessary data reference could not be resolved." I have a new MacBook Pro and have been trying to organize all my iphoto libraries.  After trying to get Iphoto Library Manager to merge my libraries for weeks and having no success, I bought Aperture and got everything merged and working.  When I finally thought I had resolved all my Iphoto issues, I realized I cannot open any of my videos.  I have read the forums and cannot find a way to fix this.  I have hundreds of video since I have four kids.  PLEASE HELP

Terence - let me try to be clearer.
1) When I open Aperture and go to a video in my library i am not given the option to play a video.  i only see an image from the video.  in the bottom of the image i see a small yellow triangle with an exclamation point.
2) When I open Iphoto, go to a video, click on the video to play it, I get the following message "a necessary data reference could not be resolved".
as a result, i have tried the following in both Aperture and Iphoto:
- repair permissions
- repair library
- rebuild library
i also reinstalled Mountain Lion.
finally, i opened my backup iphoto library from my external drive and to my horror i have exactly the same problem with the videos in my backup files as i do in the default iphoto library in my computer's hard drive.
to provide you with more background:
1- all videos were working fine prior to updating the software
2- i just bought aperture 3.3 for the first time this past Sunday because i wanted to merge all my libraries into one file.
3- aperture was great at merging all of the libraries. i an ADD to detect duplicates and it went great.
BUT now i cannot see my videos. 
does this clarify? 

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