My Word documents are not opening from sharepoint

When I attempt to open a word document from sharepoint it remains stuck at "Downloading: http://intranet/document url"
Word 2010 and SharePoint 2010
This occurred when we restored a server after virus issue. Also I noticed that I left one of these word documents in this "downloading state" and the next morning when I opened my station the document was open... therefore it seems to just be taking
WAY too long to open. 

Is this SharePoint a stand alone server, where web and database are in the same box ?
Do you know what steps changed settings from before virus, then, after virus ? Maybe people left the anti-virus running on
military emergency mode, and it's consuming all server resources.
You might want to check the database files' sizes, WSS_Content mdf and ldf. Is the ldf way too big ?

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