Newbie resolution ratio issue

I have CS3 Production Premium and I am just learning the applications. I have worked myself into a bind on my first project and wanted some advice about it.
Here is the issue:
The project involves footage from a DV cam (720x480 0.9)that is run through Ultra for a virtual set. The resulting .avi is 720x480.
This will be edited together with footage that is created from scratch in After Effects. I knew that my resulting flash product had to be 320x240. So, given that AE works faster with smaller resolutions and that I wanted to see what I could get away with in 320x240, I created the AE footage to be 320x240. This represents an amount of work that cannot be redone.
When bringing these into PrProCS3, I started with the DV cam 720x480 clips. Then I add the 320x240 clips and see that I must use the PP feature, "scale to fit frame". This leaves black bars on the left and right of the 320x240 clips as they are a different ratio than the 720x480 clips.
So,
1. What could I do about fixing the situation I have created?
2. How should I have done it to start with?
thanks very much for any ideas,
fred

This link may help:
http://blogs.digitalmediaonlineinc.com/jeffschell
Premiere Pro CS3 Podcast #11: Picture-in-Picture and Split Screen Effects
But, to be honest, I'm not sure that's the best way to go. Why not create a custom 320x240 project (using the "Desktop mode"), and then scale your DV clip down, while leaving your AE clips at 100%. It's ALWAYS preferable to scale clips down rather than above 100%; clips over 100% lose quality.
Simply make a new 320x240 custom project and import the old one into it.

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    On export, just crop a few pixels off of each side; that'll let the image scale correctly to the output frame size without black bars.
    I'm not running the trial, but you should still be able to create a custom sequence preset using the Desktop editing mode. Just switch over to the General tab when you create a new sequence, and choose "Desktop" from the editing modes. Set the rest of the parameters as you need them.
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