No alpha channel when BCC lens flare applied

Hello
With the help of Andy Neil, I created a light sweep for a lighthouse logo. I added a BCC RT Lens Flare Adv filter to enhance the effect of the light sweeping past the viewer. I looked great.
Then I got to thinking that the lighthouse logo with light sweep would make a great lower third, so I scaled it down to logo bug size and superimposed it over a lower third background.
The problem is that the inclusion of the BCC Lens Flare filter seems to add a black layer over the entire movie so that the lower third cannot superimpose over my talking head. I know it's the BCC Lens Flare because when I deactivate the filter and export, the alpha channel is present and the lower third is superimposed over the footage.
I've tried exporting with Lossless+Movie Alpha and Animation,
My question: Can anyone tell me why this is happening and how I might be able to remedy?
Thank you,
Blake

Yes, the lens flare is the problem. The generator is rendered as a blend mode which blends only with the elements in the project. The blend doesn't export as transparency because a blend mode is only transparent when combined with another layer.
Here are your solutions:
1) Composite the lower thirds with the video in Motion. If the bkg layer is in Motion, then the ADD blend mode applied to the lens flare will work properly.
2) Create an alpha matte layer. This requires you to create a black and white image of your project that defines transparency for your lower 3rd. Export that as well, and then do a Composite Mode-Luma in FCP.
3) Apply a Luma Key to your lens flare before export. This works, but is imperfect because the filter will inevitably key out some of the not-so-bright aspects of the lens flare, leaving you with a diminished result.
4) (My Suggestion): Apply the lens flare in FCP. FCP contains the SAME lens flare generator used by Motion. This will give you the best possible result with the least amount of extra work on your part.
Andy

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