Only some notes appear in bounced file

When I bounce my song there are some notes missing on an audio track. some notes in a region and later in the arrangement whole regions for this audio track are missing.
I've never had this happen. Any ideas?

Freezing the track fixed the problem, but oddly the volume of the track is lower in the mix. However the channel strip volume fader is in the same position ??????
I'd like to know what caused this to happen initially. And why the dB level is lower?.

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