PDF layers can be displayed in Acrobat but not in Illustrator?

I created a PDF file using a genome analysis software, and through Acrobat, I confirmed the layout was fine. However, when I opened it in illustrator to try to edit it, it appears that the layer containing the data dots was stripped away. Do you know why it happens? Thanks!

As I wrote the color fill for these paths were set to none there are many paths that make up the rules you have to find them all and lock them in order to be able to select the objects you want to show as well as the light blue filled rectangle paths.

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