Permissions error when trying to recover a package

The error: The operation can’t be completed because you don’t have permission to access [file]
I have been using a writing program called Scrivener which has a package with many files. That I kept open nearly all the time (including when Time Machine did its backups).

First, ProxyServer's source code must start with the line...
package com.davidflanagan.examples.net;
Next, you must have a directory structure that matches the package name - a directory named com which contains a directory named davidflanagan which contains a directory named examples which contains a directory named net and ProxyServer.class must be in the net directory,.
Next, the directory that contains com must be in your Classpath when you execute ProxyServer.
To execute ProxyServer, use "java com.davidflanagan.examples.net.ProxyServer"
http://java.sun.com/docs/books/tutorial/java/interpack/packages.html

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