Pop ups keep appearing when I go to different web pages.

A couple days ago, pop ups started to appear when I went to different websites. They show up as long white boxes on the left and right side, as well as on the bottom of the browser. When I click to exit them out, and sometimes when I click other links, a new tab opens up saying that I need to download a newer version of something. I have tried uninstalling then installing Firefox and it's still there and I have restarted the browser in safe mode and they still show up. All of my add-ons are disabled and I have scanned my computer using my anti-virus software and nothing has been found. I don't know what to do about this, if I can't fix it I will probably go back to just using Chrome.

Do a malware check with some malware scanning programs on the Windows computer. 
Please scan with all programs because each program detects different malware. 
All these programs have free versions.
Make sure that you update each program to get the latest version of their databases before doing a scan.
*Malwarebytes' Anti-Malware: http://www.malwarebytes.org/mbam.php
*AdwCleaner: http://www.bleepingcomputer.com/download/adwcleaner/ http://www.softpedia.com/get/Antivirus/Removal-Tools/AdwCleaner.shtml
*SuperAntispyware: http://www.superantispyware.com/
*Microsoft Safety Scanner: http://www.microsoft.com/security/scanner/en-us/default.aspx
*Windows Defender: Home Page: http://www.microsoft.com/windows/products/winfamily/defender/default.mspx
*Spybot Search & Destroy: http://www.safer-networking.org/en/index.html
*Kasperky Free Security Scan: http://www.kaspersky.com/security-scan
You can also do a check for a rootkit infection with TDSSKiller.
*Anti-rootkit utility TDSSKiller: http://support.kaspersky.com/5350?el=88446
See also:
*"Spyware on Windows": http://kb.mozillazine.org/Popups_not_blocked

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