Problem Starting MySQL After Security Update

I'm having trouble getting Mysql started after applying the latest security update.
I get this message on Terminal when I enter '/usr/local/mysql/bin/mysqld_safe &'
[1] 23684
sh-3.2# 100828 20:51:04 mysqld_safe Logging to '/usr/local/mysql/data/Goldeneye-2.local.err'.
100828 20:51:04 mysqld_safe Starting mysqld daemon with databases from /usr/local/mysql/data
100828 20:52:57 mysqld_safe mysqld from pid file /usr/local/mysql/data/Goldeneye-2.local.pid ended
and the error log shows this:
InnoDB: Unable to lock ./ibdata1, error: 35
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
100829 4:42:41 InnoDB: Unable to open the first data file
InnoDB: Error in opening ./ibdata1
100829 4:42:41 InnoDB: Operating system error number 35 in a file operation.
InnoDB: Error number 35 means 'Resource temporarily unavailable'.
InnoDB: Some operating system error numbers are described at
InnoDB: http://dev.mysql.com/doc/refman/5.1/en/operating-system-error-codes.html
InnoDB: Could not open or create data files.
InnoDB: If you tried to add new data files, and it failed here,
InnoDB: you should now edit innodbdata_filepath in my.cnf back
InnoDB: to what it was, and remove the new ibdata files InnoDB created
InnoDB: in this failed attempt. InnoDB only wrote those files full of
InnoDB: zeros, but did not yet use them in any way. But be careful: do not
InnoDB: remove old data files which contain your precious data!
100829 4:42:41 [ERROR] Plugin 'InnoDB' init function returned error.
100829 4:42:41 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
100829 4:42:47 [ERROR] Can't start server: Bind on TCP/IP port: Address already in use
100829 4:42:47 [ERROR] Do you already have another mysqld server running on port: 3306 ?
100829 4:42:47 [ERROR] Aborting
100829 4:42:47 [Note] /usr/local/mysql/bin/mysqld: Shutdown complete
100829 04:42:47 mysqld_safe mysqld from pid file /usr/local/mysql/data/Goldeneye-2.local.pid ended
Do I just delete the ibdata file, or is something else involved.
Thanks for any help you can give.

Mihalis,
Thanks for the advice. Apparently I did have MySQL running, and when I connected via the terminal I was also able to connect with Safari and use phpMyAdmin to access the database.
My undergraduate major 40+ years ago was Classics (Latin and Greek), and while my Greek is at kindergarten level I do hope to visit there someday.
Thanks again.
Tom Hart

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