Problem with Javadoc gen'in two instances of a sourcefile in the class list

Hallo,
I have a set of source files that I'm gen'ing with the ant task javadoc.
sourcefiles="javadocs/PTConfigServer-root/src/com/palantir/config/util/SshUtils.java,
javadocs/PTConfigServer-root/src/com/palantir/config/util/StafUtils.java,
javadocs/PTCommons-root/src/com/palantir/util/Pair.java,
javadocs/PTCommons-root/src/com/palantir/util/XMLTag.java,
javadocs/PTCommons-root/src/com/palantir/util/MutuallyExclusiveSetLock.java,
javadocs/PTCommons-root/src/com/palantir/exception/PalantirException.java,
javadocs/PTCommons-root/src/com/palantir/exception/PalantirUserMessageException.java,
javadocs/PTCommons-root/src/com/palantir/exception/VersionMismatchException.java,
javadocs/PTCommons-root/src/com/palantir/util/Mutable.java,
javadocs/PTCommons-root/src/com/palantir/util/MultiMapSet.java,
javadocs/PTCommons-root/src/com/palantir/util/MultiMapOrderedSet.java,
javadocs/PTCommons-root/src/com/palantir/util/MultiMapList.java,
javadocs/PTCommons-root/src/com/palantir/util/MultiMapConcurrentHashSet.java,
javadocs/PTCommons-root/src/com/palantir/util/MultiMap.java,
javadocs/PTCommons-root/src/com/palantir/util/i18n/DefaultDateFormatterFactory.java,
javadocs/PTCommons-root/src/com/palantir/util/i18n/DateFormatterManager.java,
javadocs/PTCommons-root/src/com/palantir/util/i18n/DateFormatterFactory.java,
javadocs/PTCommons-root/src/com/palantir/util/i18n/DateFormatter.java,
javadocs/PTCommons-root/src/com/palantir/util/awt/Awt.java"
The first two gen properly with only one of each class showing up in the class list. Then, starting with the PTCommons files, javadoc lists each class twice in the class list. In the actual generated documentation, there is only one instance of the file.
Has anyone seen this before?
Mary

Im having a problem with the variables.
Part of my original problem might be each pxi was in a different project. and i had two projects each its own IP. Using this method i did not know how use two differnt variables from two differnet pxi' s with the same program.
if your still following.
i tried a simpler way
i modified my project to include both ip addresses. 
this way In my window environment my vi calls the variable. i made sure that i right clicked and chose the variables from the correct ip.
what i have is two status indicators and two update buttons.
the status tells me what stage the test is in
the update button is for the user at the end of the test he can update the screen with the results.
currently only my second pxi is updating status and also the update works
this is my windows vi alias file
[My Computer]
My Computer=localhost
[S4000xH-System1]
S4000xH-System1=192.168.110.10
[S4000xH-System2]
S4000xH-System2=192.168.110.3
do i need to bind to source or use the single writer. im going to try to undo the single writer seems like this would could onluy better it but doesnt seem like its for my application.
 i forgot to mention that the varibles i use  were there listed as dependancies for the windows evirment have a blue question mark  but show what is wrong.  
where i have the variables under the ip address there are no blue question marks

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