References pages, items removed

Hi,
I have started at a new job and have been experiencing issues with my index template here. After looking at all the template chapter files I noticed that any references to Table of Contents specifications, Index specifications and the HTML mapping table do not exist.
I did a test and put my index specs back onto the Chapter reference page and rebuilt my book and now the index works correctly.
Why would anyone delete this stuff off of the reference pages for the Chapter? I have never worked with any templates that has this information removed, including the ones that come with FrameMaker.
Using FM Version 8 right now.
Thanks in advance!

I don't know how or who created the templates, there is no backup information for them. But by putting my index specs (as shown here) back on the reference page for the Chapter allows all of my index markers to appear. If I don't do this, I get some index hits with just a page number. I removed the old index, removed all the old markers and started fresh, and the problem still appeared, until I did this.
1, 2–3
Level3IX
Level2IX
Symbols[\ ];Numerics[0];A;B;C;D;E;F;G;H;I;J;K;L;M;N;O;P;Q;R;S;T;U;V;W;X;Y;Z
<$symbols><$numerics><$alphabetics>
Level1IX
openObjectId <$relfilename>:<$ObjectType> <$ObjectId>
<$pagenum>I am not sure how or who created the templates, but this fix works for whatever reason, putting

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