Role assignment did not work during migration

We just finished a QA migration from EP60 to NW04 SPS14.
Everything went OK with the exception of the following:
Users who had customer defined roles assigned in the source system (EP60) did not get the roles assigned in the target system.(NW04) For example, if I had a few out of the box SAP roles assigned to a user in the source system, they were assigned to that user in the migrated NW04 system. The customer assinged roles did not get attached to the same users users.
Has anybody run into similar findings ???

Some more info.
We may have figured out that during the migration the NW portal inititaed a connection to our LDAP server and failed. We have MSADS with a multi LDAP configuration and have configured SSL for the connection to LDAP.
Any Ideas ???
I pulled this out of the trace file:
#1.5#005056B171CC00560000000C00000FE8000405C779F98BF4#1132254209877#/System/Security##com.sap.engine.services.keystore#Administrator#389####d73f3750579c11da8ea8005056b171cc#SAPEngine_Application_Thread[impl:3]_28##0#0#Warning#1#com.sap.engine.services.keystore#Java###Source: java.lang.NullPointerException; Description: ; Consequences: ; Countermeasures:##
#1.5#005056B171CC00610000000600000FE8000405C779FA37A6#1132254209924#/System/Security##com.sap.engine.services.keystore#Administrator#389####d73f3750579c11da8ea8005056b171cc#SAPEngine_Application_Thread[impl:3]_32##0#0#Warning#1#com.sap.engine.services.keystore#Java###Source: java.lang.NullPointerException; Description: ; Consequences: ; Countermeasures:##
#1.5#005056B171CC001D00000001000011D0000405C7DA2B657E#1132255823810#/System/Security/Usermanagement##com.sap.security.core.persistence#######SAPEngine_System_Thread[impl:5]_23##0#0#Fatal#1#com.sap.security.core.persistence#Java###No connection to the ldap server, recheck configuration or availability of directory server##
#1.5#005056B171CC001D00000004000011D0000405C7DA2B6F70#1132255823810#/System/Security/Usermanagement##com.sap.security.core.persistence#######SAPEngine_System_Thread[impl:5]_23##0#0#Fatal#1#com.sap.security.core.persistence#Java###Server not available,recheck configuration or availability of directory server##
#1.5#005056B171CC001D00000007000011D0000405C7DA2B7443#1132255823810#/System/Security/Usermanagement##com.sap.security.core.persistence#######SAPEngine_System_Thread[impl:5]_23##0#0#Fatal#1#com.sap.security.core.persistence#Java###Initialisation of a connection pool failed for UACC please check the configuration or availability of the directory server##
#1.5#005056B171CC001D00000009000011D0000405C7DA2B78C2#1132255823810#/System/Security/Usermanagement##com.sap.security.core.persistence#######SAPEngine_System_Thread[impl:5]_23##0#0#Fatal#1#com.sap.security.core.persistence#Java###Please recheck the LDAP configuration Initialisation of connection pool failed for UACC
     poolname qadc2.app.csa-group.qa:636_UACC
     java.naming.factory.initial= com.sun.jndi.ldap.LdapCtxFactory
     java.naming.security.principal= cn=epqadm2,ou=PortalUsers,dc=app,dc=csa-group,dc=qa
     java.naming.ldap.version= 3
     connection_pool_name= qadc2.app.csa-group.qa:636_UACC
     java.naming.provider.url= ldap://qadc2.app.csa-group.qa:636/ou%3DPortalUsers%2Cdc%3Dapp%2Cdc%3Dcsa-group%2Cdc%3Dqa
     java.naming.security.protocol= ssl
     java.naming.ldap.factory.socket= com.sap.security.ssl.SSLSocketFactory
     java.naming.security.authentication= simple
     java.naming.security.credentials= ******
     [EXCEPTION: no connection to the ldap server:null]##
#1.5#005056B171CC001D0000000D000011D0000405C7DA2B8C9E#1132255823810#/System/Security/Usermanagement##com.sap.security.core.persistence#######SAPEngine_System_Thread[impl:5]_23##0#0#Error#1#com.sap.security.core.persistence#Java###DataSource : Initialisation of connection manager failed, due to SSL configuration lazy initialisation#1#CORP_LDAP2#

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