Save myrio backup take over

Hey guys I recently launched by robot with a variety of sensor's.  These sensor's were programmed using labview and saved using the write to measurement file, express VI.  I had made a VI in labview then turned it into a RT target, and thus deploying them on my robot. 
After letting the robot run for several minute's I went back to the C drive of the myrio in which I stored all the data. 
Several files were incomplete and or divided amongst the main file's directory, I had set the main file to save as and backup file's.  It looked almost as if it had saved to these file's and then continued after a certain amount of time to these backups.  Can someone explain this?  And is their anyway to recover the whole file together?
And if so is their anyway to recover the whole file, instead of peicing together different save files.  As i have around 30 backup file's and it's tough to peice together everythng without knowning what  everything is. 
Thank you for your time,
Caleb
Attachments:
ReconMod.vi ‏870 KB

"There are also a lot of places where you're writing to files one element at a time.  It's typically better to buffer up chunks of data and only write to disk ocasionally (disk write operations are relativly slow)."
This I discovered when writing a servo code. 
"Nw if you look at the express VIs you're using (double click to open the config pane) to write to files most are set to Rename the file if it already exists.  So in this case when you're calling the Write to Measurement file over and over in a loop you'll get a bunch of similarly named files rather than one large file full of data."  \
How do I prevent this?  Would it be append to file.
Also now that I think about it, would this cause the vi to write several save points and then go to randomly numbered backup files?
As far as the system I say robot, but it's actually a rocket, with a bunch of sensor's that are on it.  The GPS at the bottom of the code is to work at all times with the sensor's only working on descent, with a camera looking for a match of a preset image upon descent.
I know the artcheture is kinda crude but I wanted clear separation between each sensor. 
It then has a second myrio attached to the bottom, to operate a servo with strain gauges.  The servo is pull a metallic cylinder up and down controlling a rod attached a motor.  I've attached the code as well. 
I am almost 90% certain the rod worked during flight but the saving of it came back as zero's as well, which to me think's my saving was messed up similar to the other bay of the rocket.  As their is no way an acclerometer can read zero.  And it did change the accleration as thought. 
Attachments:
thrust mod.vi ‏957 KB
stain.png ‏87 KB

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