Search and index across child projects seem inconsistent.

Hi
I created a new Master project and added a child project using RoboHelp 9 HTML to created a Microsoft HTML file.  When I open the Master's chm file, I can view the index for the complete project (master and child) as well as do a search across the entire project.    Then I added another child project (after creating an index in the child) and rebuilt my master.  New when I view the new master chm file, the index does not include second child, although it does included the first child, and the search does not search the second child.  Any help would be greatly appreciated.

Thank you very much Amebr.  Your answer was right on the mark.  I think I discovered how the path was hard-coded.  I will describe what happened in case anyone else has a similar situation.
Below  is a copy of the "MERGE FILES" section of my master project's HPP file.  I removed the "!SSL!\Microsoft_HTML_Help\" from "!SSL!\Microsoft_HTML_Help\FOCUS_Utility.chm".  But when I regenerated the master project, the path ("!SSL!\Microsoft_HTML_Help\") was re-added to the file name and the problem persisted. 
The difference between " Weight_Module.chm" "Deckhouse_Module.chm" and the other merged files is that I imported them for outside of the folder containing the master project's files.   With the other files I coped them to the "!SSL!\Microsoft_HTML_Help\" of the master project before I merged them in the TOC of the master.  To fix the problem I had to:
remove the projects from the mater's TOC
Remove the line in the "[MERGE FILES]" section of the master project's .hhp file
copy the merged files' chm to a folder outside of the master's folder.
Remerge the merged ( or child) project in to the TOC of the master project and let RoboHelp copy the merged chm file into the masters "!SSL!\Microsoft_HTML_Help\" folder.
Regenerated the master project.
[MERGE FILES]
Weight_Module.chm
Deckhouse_Module.chm
!SSL!\Microsoft_HTML_Help\FOCUS_Utility.chm
!SSL!\Microsoft_HTML_Help\PRFMNC.chm
!SSL!\Microsoft_HTML_Help\Performance_53.chm
!SSL!\Microsoft_HTML_Help\Payloads_Utility.chm

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