Snow Leopard Server Update Issue

Good afternoon.
I had some issues with my software update server, not issuing the correct updates and been real sluggish etc. After doing some research on the web and in this forum, I have reset the /etc/swupd and /var/db/swupd folders, rebooted, turned back on the update server and reconfigured everything.
I have noticed that after some time, the updates are downloaded and the blue exclamations go away. I enable the updates that I want and save everything. After a reboot of the server, all my enabled copied downloads are back to 0. And the "Updates Copied" and "Updates Enabled" are back to 0.
I have repaired disk permissions, FSCK etc, and all appears well. In the my /var/db/swupd/html/content/downloads, I have a couple GB of stuff. If I go further into this folder structure I can actually see the updates. It feels like a configuration file is not been written to correctly, and hence on reboot everything goes back to default. The permissions on swupd.conf and swupd.plist appear to be fine and there contains are OK.
Has anyone encounted this issue before or have any suggestions? I tried going back to the backups I made before I reset the /etc/swupd and /var/db/swupd folders but I have the same issue.
Regards Chris.

Does anyone here have a crystal ball?  I can't answer it anymore than the next person.  I'd ask it in the Snow Leopard Server forum after the release date.  This is a user to user forum.

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