Startup application doesn't start on cRIO (work fine on the target with LV RT)

Hello!
I have a application (running on a cRIO-9075) that is communicating with a GPS via RS-323 (using NI-9870).
I can run the code without problems with LabVIEW RT on the target but when I build the executable and setting it up to run at startup it doesn't run.
If I remove the GPS code, the startup application will run fine. As soon as I put back the GPS code, it will not... I see that looking at a Heartbeat shared variable (no heartbeat when the GPS code is there). Also, the startup application will not run if the GPS code is there even if that code is disabled...
I have attached a screenshot of the code and one of the software installed on the cRIO for more clarity.
I'm using LabVIEW 2011.
Thanks in advance!
Vincent
Attachments:
GPS Code.PNG ‏10 KB
Software on cRIO.PNG ‏22 KB

Hello,
Sorry for the late response.
I was able to make the application work for some time and for an unknown reason, it's not starting anymore. I made a change in the code and the problem is now back.
The code still work as expected when launched using LabVIEW (arrow button).
The output from the console is attached to this message, everything seems fine to me but maybe I'm missing something.
I've looked at my code and I can't find any unreachable code (case structure or disable structure).
I don't know if it might be related but I'm also getting the famous 1502 error (cannot save bad VI without block diagram) so I have to enable debugging to be able to build my application (which doesn't start afterwards).
Any ideas?
Thanks
Vincent
Attachments:
App_NOT_Starting_Correctly.txt ‏3 KB

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    HKCR,CLSID\{CA0D4D3E-98ED-4787-AF02-4AF2A1303ACC},,,"Canon Image Processing Filter"
    HKCR,CLSID\{CA0D4D3E-98ED-4787-AF02-4AF2A1303ACC}\InProcServer32,,,%11%\CNCE8300.dll
    HKCR,CLSID\{CA0D4D3E-98ED-4787-AF02-4AF2A1303ACC}\InProcServer32,ThreadingModel,,"Both"
    ;  The above GUID is specific to MF8300 and MUST change for a different model.
    [WiaFiles]
    CNCC8300.DLL
    CNCI8300.DLL
    CNCL8300.DLL
    [Wia2Files]
    CNCC8300.DLL
    CNCI8300.DLL
    CNCL8300.DLL
    CNCE8300.DLL
    [CNCDsFiles]
    CISDS.DS
    SGUI.DLL
    SGUI_RES.DLL
    WIARES.DLL
    IOP.DLL
    ITLIB32.DLL
    SCANINTF.DLL
    TPM.DLL
    CNCFR08.DAT
    MC2.TXT
    JDA_CIMG.DLL
    NBS4MB.DLL
    NBSCOR4M.DLL
    RMSLANTC.DLL
    RSTCOL.DLL
    [MPScanLLD]
    CNCMFP36.INI,,,0x20
    CNCLSI36b.DLL,,,0x20
    CNCLSD36b.DLL,,,0x20
    CNCLSC36b.DLL,,,0x20
    CNCLST36b.DLL,,,0x20
    CNCLSU36b.DLL,,,0x20
    [CNCMediaFiles]
    CSSAMP1.MID
    ;-------------------------------Source Index
    [SourceDisksFiles]
    CNZ005.ICC=1
    ITLIB32.DLL=1
    JDA_CIMG.DLL=1
    NBS4MB.DLL=1
    NBSCOR4M.DLL=1
    RMSLANTC.DLL=1
    RSTCOL.DLL=1
    CISDS.DS=1
    SGUI.DLL=1
    IOP.DLL=1
    SCANINTF.DLL=1
    TPM.DLL=1
    SGUI_RES.DLL=1
    WIARES.DLL=1
    CSSAMP1.MID=1
    CNCFR08.DAT=1
    CNFR08.ICC=1
    MC2.TXT=1
    CNCC8300.DLL=1
    CNCI8300.DLL=1
    CNCL8300.DLL=1
    CNCE8300.DLL=1
    CNCMFP36.INI=1
    CNCLSI36b.DLL=1
    CNCLSD36b.DLL=1
    CNCLSC36b.DLL=1
    CNCLST36b.DLL=1
    CNCLSU36b.DLL=1
    CNCLSO36b.DLL =1
    [SourceDisksNames]
    1=%D1%,scan.cab,
    ;-------------------------------String Aliases
    [Strings]
    Msft="Canon"
    Mfg="Canon"
    SGDKEY="Software\Wow6432Node\Canon\SateraMFP1\ScanGear\11.3\Devices\MF8300"
    STIKEY="Software\Wow6432Node\Canon\SateraMFP1\ScanGear\STI"
    DEFAULTKEYNAME="Software\Wow6432Node\Canon\SateraMFP1\Toolbox Ver4.9\Devices\"
    KEYNAME="\Software\Canon\MFToolbox\"
    WIASGDKEY="Software\Canon\SateraMFP1\WIA\3.0\Devices\MF8300"
    WIASTIKEY="Software\Canon\SateraMFP1\WIA\STI"
    D1="Canon MF8300 Series Setup Disk"
    LPTENUM\CNC.DeviceDesc="Canon MF8300 Series"
    ButtonApp        = "MF Toolbox Ver4.9"
    CNCRFN           = "MF8300"
    CNC.MDL          = "Canon MF8300"
    CNC.SRS          = "Canon MF8300 Series"
    CNC.DeviceDesc   = "Canon MF8300"
    CNC.SPInfo       = "Canon MF8300 Scanner"
    CNC.TwainDS      = "Canon MF8300 Series"
    CNC.ColorGear    = "FR08"
    PushButtonPushed1= "Scan-1"
    PushButtonPushed2= "Scan-2"
    PushButtonPushed3= "Scan-3"
    PushButtonPushed4= "Scan-4"
    CNC.FriendlyName     = "WIA Canon MF8300 Series"
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