STMS shows wrong release after upgrade

I've just upgraded our DEV box (also our transport domain controller) from R/3 4.6C to ECC 6.0 and am trying to get STMS to show the new release version on the system overview screen.
I try to "update configuration" but the release remains the same with value "46C".
Any ideas?
Thanks.

Hi All,
I also upgraded my Development system from 4.6C to ECC6.0. Now i want to reconfigure the stms. can u please let me how to reconfigure that.
Hemanth

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===========================
2>Using "GetDeploymentPathFromVsixManifest" task from assembly "C:\Program Files (x86)\MSBuild\Microsoft\VisualStudio\v12.0\VSSDK\Microsoft.VsSDK.Build.Tasks.dll".
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2>Target "FindExistingDeploymentPath" in file "C:\Program Files (x86)\MSBuild\Microsoft\VisualStudio\v12.0\VSSDK\Microsoft.VsSDK.targets" from project "C:\cygwin\home\cpedlar\w\git\desktop\vs\Trunk\vs2012\Vs2012.csproj" (target
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2>Target "DeployVsixExtensionFiles" in file "C:\Program Files (x86)\MSBuild\Microsoft\VisualStudio\v12.0\VSSDK\Microsoft.VsSDK.targets" from project "C:\cygwin\home\user\w\git\desktop\vs\Trunk\vs2012\Vs2012.csproj" (target "PrepareForRun"
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===========================
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try on another win7 machine in the near future and see if I can narrow down the issue. I will update again if I find any additional information.
Thanks,
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I just spent a half day trying to trouble shoot this problem assuming it was due to a change in the project settings. The error message is extremely misleading, and it would be nice if Microsoft could provide a fix for this issue!
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        RootSuffix="$(VSSDKTargetPlatformRegRootSuffix)"
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https://social.technet.microsoft.com/forums/sharepoint/en-US/580111d4-72ca-4193-87ab-1dfd6082fa88/document-set-library-column-not-showing-up-on-edit-form
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