TDS deducting twice while making payment

Dear Friends,
The user has compeleted PO,Miro and accounting documents in which TDS was deducted.
But when time of payment using T.code F-53 , TDs is again displayed and deducting the amount, which should not be done.
In vendor master, Tax code is defined and liable check box is selected.
While making the payment, TDS should not be deducted.
Please suggest.
Regards
Sridhar

Dear Friends,
I went to vendor master recored and removed the liable check box ticket for withholding tax .
When I am trying to simulate f-53, I am getting this message.
7 items have not been activated due to inconsistent withholding tax info
     Message no. F5787
Diagnosis
The open items display different withholding tax information from the relevant business partner master record. For example, the number of withholding tax types in the open item could differ from the number      withholding tax types in the master record.
System Response
Items are not activated.
Procedure
Change the withholding tax data for the open item in question.
As per my knowlege, I have to go T.code SE38 and report execute program RFWT0010 to remove this message.
What are the consequnces that will happen or will it solve my probelm.
Regards
Sridhar

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