Updated iPhone 4 to 7.0.6 and lost most of my apps-what do do?

I updated my iPhone 4 to 7.0.6 and had to restore it from recovery mode - now only half of my apps have been reinstated and restoring from backup is not an option as the most recent backup besides today's appears to be last October. Suggestions welcome!

Did you back it up with iTunes on a computer, set to use local storage and not the iCloud AND the apps to be synced?
In my iTunes "command center" where I control the iPad and iPhone (on a Mac running Lion), a backup copy of ALL the apps I have ever acquired (578 at last count) are stored in a local folder and I have never had to lose one or manually restore. I've taken the iPhone from an initial 6.0.4 up to 7.0.6 (about 6 upgrades) and the iPad from 6.1.4 to 7.0.6 (4 upgrades) and have never had to reinstall a single app.

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