What is the best way to port a entire website?

I need to elevate my test site to the production site...  Can anyone tell me if there is an "easy way to just copy the site from one remote ftp to another ftp w/ dreamweaver?
This would include any subdirectories, jquery, images, PHP, etc... at one time.  Can I just select the root and have it copy everything underneath over?
What is the best practice for transferring the new site?  Bring down the old site and erase from the production server?  If I leave the old site live like the client wants I could run into conflicts and then need to go back and delete any remnants of the old site (Which would be a major hassle).
Thanks!

If you have root access (dedicated,VPS, etc) or some way to host multiple sites on the same server I'd upload the new site right along side the old site and then point the domain to the new folder/account.  If you don't have that access, first thing I would do is setup a catch-all redirect to push everything at first to a construction page, and then afterwards to the new homepage in case paths have changed with the new site.  Something like the following in htaccess will do the trick:
RewriteEngine On
RewriteCond %{REQUEST_URI} !=/index.php
RewriteRule .* /index.php
And I will second what Ken said about a 3rd party FTP client.  Personally I use Transmit as an alternative FTP client and would highly recommend them for a stand-alone client. 

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