Why do links in the template change location to 'file:///'...on the pages created from the template?

Im not sure what I am doing wrong but I am building a portfolio site from a template that I downloaded online.
The site is working and I am slowly converting it from the template content to the content that I want.
As I will be editing the site and adding more pages I decided to try and add the Header, footer and main navigation bar as a template with another gallery container and navigation as an option on the template.
I thought that it was working fine untill I noticed that the links on the pages created using the template are showing as follows,
instead of the links that were in the template that show as,
Is this something that will change when I upload the site with the template or have I done something wrong making the links?

Usually this happens when you don't use a proper Site Definition, or if you have files outside your defined site folder.
Have you defined your site properly?
http://tv.adobe.com/watch/learn-dreamweaver-cs5/gs01-defining-a-new-site/

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